Code

1015 binary cif support#1040

Code

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ppillot merged 29 commits intonglviewer:masternglviewer/ngl:masterfrom papillot:1015-Binary-Cif-supportpapillot/ngl:1015-Binary-Cif-supportCopy head branch name to clipboardMay 24, 2024

+6,795-15,945

Commits

Commits on May 24, 2024

• Types inference improvements: Structure in StructureParser

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• Add molstar as a dependency (importing mol-io)

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• Allow async parsing methods

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• Parsing single model binary cif from RCSB

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• Implement core and chem_comp schema

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• Use DSSP codes from struct_conf for alpha fold ss assignation

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• Handle asTrajectory and firstModelOnly flags

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• Get connectivity from chem_comp_bond

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• Update RCSB datasource to default to binary cif files

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• Add PDBe server as datasource

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• Use PDBe by default when opening PDB codes

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• remove cif-parser.ts file

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• Rename bcif-parser to cif-parser

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• type Structure.extraData.cif

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• update alphafold datasource suffix

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• ebi.ac.uk does not support requests made on http:// protocol

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• fix import

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• fix: jest cannot import modules from molstar dir

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• fix: origx property is malformed

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• fix: parse connections is broken

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• fix default export must be CifParser (backwards compatibility)

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• remove unused code

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• fix: float(i) returns 0 if value is missing

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• 4CWU superseded by 6CGV

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• fix: operator expression with parentheses breaks parser

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• fix: compressed cif files are parsed as binary

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• fix: alt-loc is always empty

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• update file header

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• fix: some entities might be defined but not have any coordinates

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