Skip to content

Issues: ngless-toolkit/ngless

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

35 Open 93 Closed
35 Open 93 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

To use the motus module for newer versions, you need to download it and import it with 'local import'
#154 opened Jul 15, 2022 by zckoo007
1
fd:12: hPutBuf: resource vanished (Broken pipe)
#153 opened Jun 22, 2022 by uloeber
custom pattern recognition load_fastq_directory
#145 opened Mar 3, 2021 by uloeber
1
Error ir mapping step better error message
#142 opened Dec 7, 2020 by chodarq
7
Feature request: Filter mapped reads by minimum match fraction enhancement
#139 opened Oct 12, 2020 by luispedro
Using collect on countables from mapstats gives a funny result
#138 opened Sep 18, 2020 by mettejoe
Better debug message for files missing for collect() better error message enhancement
#136 opened Apr 23, 2020 by unode
Introduce computation stages - validation, download, prepare, ... enhancement performance
#135 opened Mar 4, 2020 by unode
1
No HTML report is generated when using the parallel module bug help wanted
#133 opened Feb 27, 2020 by unode
2
Add read_length() to ShortRead type enhancement
#126 opened Dec 5, 2019 by unode
2
Broken pipe with samtools view upon conversion from minimap2 SAM -> BAM
#124 opened Oct 15, 2019 by unode
1
Implement readset return type types for modules enhancement
#119 opened Aug 20, 2019 by mkuhn
2
Inconsistent use of local import bug
#117 opened Aug 12, 2019 by unode
1
Reading .bz2 files fails to decompress or segfaults
#116 opened Jul 31, 2019 by unode
14
Update documentation for motus profiling to reflect motus2 documentation
#114 opened Jul 17, 2019 by theavanrossum
3
Allow collect()'ing when all processing is complete enhancement
#112 opened Jun 19, 2019 by unode
2
Add ability to strip sequences/qualities from SAM/BAM files good first issue help wanted
#102 opened Feb 28, 2019 by unode
7
Implement API to cleanup unnecessary files enhancement good first issue
#99 opened Feb 7, 2019 by unode
API for querying available versions of modules enhancement
#87 opened Oct 15, 2018 by unode
mapstats() should error with position sorted sam/bam files
#80 opened Sep 19, 2018 by unode
Improvements to qcstats (fastq, mapping) formats - explicit behavior? enhancement help wanted question
#75 opened Jun 26, 2018 by unode
2
Decouple stats machinery from HTML reporting enhancement
#74 opened Jun 26, 2018 by unode
Include file grouping information in fqstats enhancement
#73 opened Jun 19, 2018 by unode
as_reads should not require that BAM file be sorted enhancement help wanted
#72 opened Jun 19, 2018 by luispedro
Implement a setup phase for external modules enhancement
#71 opened Jun 13, 2018 by unode
@unode
ProTip! Follow long discussions with comments:>50.