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Pull requests: nf-core/tools

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Pull requests list

Update actions/checkout digest to 8e8c483
#3956 opened Dec 3, 2025 by renovate bot Loading…
1 task
1
[WIP] Command to generate pipeline container config files
#3955 opened Dec 2, 2025 by mirpedrol • Draft
1 of 5 tasks
Implement wave container commands
#3954 opened Dec 2, 2025 by JulianFlesch • Draft
4 tasks
@ningyuxin1999
Configbuilder: nf-core configs create
#3949 opened Dec 1, 2025 by mirpedrol Loading…
Fix quote handling in meta.yml
#3948 opened Dec 1, 2025 by mashehu Loading…
fix test for linting for version.yml
#3947 opened Dec 1, 2025 by mashehu Loading…
Update dependency prettier to v3.7.3
#3944 opened Dec 1, 2025 by renovate bot Loading…
1 task
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.14.7
#3943 opened Dec 1, 2025 by renovate bot Loading…
1 task
1
Switch to uv and prek on pipeline linting
#3942 opened Nov 30, 2025 by dialvarezs Loading…
1 of 4 tasks
2
sync: don't overwrite the defaultBranch if already set in nextflow.config
#3939 opened Nov 27, 2025 by mashehu Loading…
1
Pipeline template: New pre-commit hooks (large files, merge conflicts)
#3935 opened Nov 26, 2025 by MatthiasZepper Loading…
2 of 4 tasks
10
Simplify coverage reporting in pytest.yml
#3934 opened Nov 26, 2025 by mashehu Loading…
1
Update python:3.14-slim Docker digest to 119fd5b
#3910 opened Nov 19, 2025 by renovate bot Loading…
1 task
4
add schema to devcontainer.json
#3908 opened Nov 18, 2025 by mashehu Loading… 3.6.0
1
Move CONTRIBUTING.md to docs/, review and update text, and add pipline-specific conventions section
#3903 opened Nov 16, 2025 by jfy133 Loading…
1 of 4 tasks
5
feat(template): trigger nf-test full run if scripts in bin modified
#3897 opened Nov 13, 2025 by prototaxites Loading…
2 of 4 tasks
3.6.0
3
simplify TEMPLATE with nf-core-utils 0.4.0
#3870 opened Nov 4, 2025 by maxulysse Loading…
4 tasks
4
TEMPLATE: add a fallback for new outputdir parameter
#3798 opened Oct 3, 2025 by mashehu Loading…
2
Migrate template to nf-core-utils plugin
#3790 opened Oct 1, 2025 by edmundmiller • Draft
4 tasks
@adamrtalbot
15
Testing out Reftrace for regex replacement in modules
#3745 opened Sep 2, 2025 by ningyuxin1999 • Draft
4 tasks
3.5.0
@ningyuxin1999
5
Use branch-deploy action
#3744 opened Sep 2, 2025 by kevinbackhouse Loading…
4 tasks
3
Tests cleanup
#3733 opened Aug 27, 2025 by edmundmiller • Draft
2
@edmundmiller
15
General: add pytest for get_wf_files
#3725 opened Aug 26, 2025 by mirpedrol Loading… 3.6.0
7
Patch patch command
#3714 opened Aug 15, 2025 by ErikDanielsson Loading…
2 of 4 tasks
@ErikDanielsson
5
TEMPLATE - add trainling slash for pipelines_testdata_base_path
#3701 opened Aug 5, 2025 by maxulysse Loading…
4 tasks
3
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