test new character-level diffs

Author: mashehu

.github/actions/get-shards/action.yml

@@ -26,10 +26,10 @@ runs:
         java-version: "17"
 
     - name: Set up nf-test
-      uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
+      uses: nf-core/setup-nf-test@main # v2
       with:
         version: ${{ env.NFT_VER }}
-        install-pdiff: true
+        install-fast-diff: true
 
     - name: Get number of shards
       id: shards

.github/actions/nf-test-action/action.yml

@@ -37,10 +37,10 @@ runs:
         python-version: "3.14"
 
     - name: Set up nf-test
-      uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
+      uses: nf-core/setup-nf-test@main # v2
       with:
         version: "${{ env.NFT_VER }}"
-        install-pdiff: true
+        install-fast-diff: true
 
     - name: Set up apptainer
       if: contains(inputs.profile, 'singularity')

.github/workflows/update-gpu-snapshot.yml

@@ -71,10 +71,10 @@ jobs:
           python-version: "3.14"
 
       - name: Set up nf-test
-        uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
+        uses: nf-core/setup-nf-test@main # v2
         with:
           version: "${{ env.NFT_VER }}"
-          install-pdiff: true
+          install-fast-diff: true
 
       - name: Update gpu snapshot
         id: update-gpu-snapshot

.github/workflows/update-sentieon-snapshot.yml

@@ -74,10 +74,10 @@ jobs:
           python-version: "3.14"
 
       - name: Set up nf-test
-        uses: nf-core/setup-nf-test@ce65500579e8587607aab289ecb3a9c343c32e79 # v2
+        uses: nf-core/setup-nf-test@main # v2
         with:
           version: "${{ env.NFT_VER }}"
-          install-pdiff: true
+          install-fast-diff: true
 
       # Set up secrets
       - name: Set up Nextflow secrets

modules/nf-core/multiqc/main.nf

@@ -19,7 +19,7 @@ process MULTIQC {
 
     when:
     task.ext.when == null || task.ext.when
-
+//trigger test
     script:
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ? "--filename ${task.ext.prefix}.html" : ''

modules/nf-core/multiqc/tests/main.nf.test.snap

@@ -175,7 +175,7 @@
                     [
                         "MULTIQC",
                         "multiqc",
-                        "1.34"
+                        "1.33"
                     ]
                 ]
             }
@@ -195,7 +195,7 @@
                             "id": "FASTQC"
                         },
                         [
-                            ".stub:md5,d41d8cd98f00b204e9800998ecf8427e"
+                            ".stub:md5,sadd8cd98f00b233e9800998ecf8427e"
                         ]
                     ]
                 ],
@@ -205,7 +205,7 @@
                             "id": "FASTQC"
                         },
                         [
-                            ".stub:md5,d41d8cd98f00b204e9800998ecf8427e"
+                            ".stub:md5,d41d8cd9sf0b204e9800998ecf8427e"
                         ]
                     ]
                 ],
@@ -214,16 +214,9 @@
                         {
                             "id": "FASTQC"
                         },
-                        "multiqc_report.html:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        "multiqc_report.html:md5,d41d8cd98fss00b204e9800998ecf8427e"
                     ]
                 ],
-                "versions": [
-                    [
-                        "MULTIQC",
-                        "multiqc",
-                        "1.34"
-                    ]
-                ]
             }
         ],
         "timestamp": "2026-02-26T15:14:39.789193051",
@@ -419,4 +412,4 @@
             "nextflow": "25.10.4"
         }
     }
-}
+}