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innf-core/hicar (press backspace or delete to remove) - [ ] Fork the pipeline to your user account, if you have not done so before (Make sure you deselect Copy the master
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- [ ] Go to the dev branch and sync the upstream changes (Sync ...
documentation
jen-reeve
- Opened yesterday
- #119
I have been working on reproducing the GM12878 and H1 results from your original Hi-CAR paper, where you analyzed 4
and 3 replicates, respectively. However, I was only able to process 3 replicates for ...
Adeel3Dgenomics
- Opened 13 days ago
- #118
Description of the bug
I get Java heap space error for any configuration of Nextflow versions even though I have added NXF_OPTS= -Xms1g -Xmx4g
to my .bashrc...
N E X T F L O W ~ version 22.04.5 Launching ...
bug
luciazifcakova
- 5
- Opened on Apr 10, 2024
- #108
Description of the bug
do I need to use my local version of R?
Command used and terminal output
Hi guys, I have tested hicar 1.0.0 nextflow run nf-core/hicar -r 1.0.0 -profile test --outdir ./ and ...
bug
- 2
- Opened on Mar 13, 2024
- #106
Description of the bug
To prevent breaking this pipeline in the near future, the nf-validation version should be pinned to version 1.1.3 like:
plugins {
id nf-validation@1.1.3
}
Command used and ...
bug
nvnieuwk
- 1
- Opened on Feb 22, 2024
- #104
Description of the bug
Dear HiCar authors: When I run hicar with pilot seq data, i.e., sequenced at low-depth, it errs with the following info.
I check the file such as reg_raw.chr1.adultCM.5k.and.MAPS2_pospoisson, ...
bug
realzhang
- 2
- Opened on Mar 27, 2023
- #82
I found that the .hic file generated by hicar could not be opened by juicebox, so do the .hic file downloaded from
https://nf-co.re/hicar/results#hicar/results-429087d2b13e59c3edd2e71b8005c1adc5bbb7bb/cooler/hic/, ...
Rhine86
- 2
- Opened on Mar 1, 2023
- #80
Description of the bug
I have trouble running the hicar pipeline, I first run within the screen and interactive session, using Conda as the
environment, but then it breaks, after researching online knowing ...
bug
ILM-MLOlab
- 1
- Opened on Aug 25, 2022
- #73
Description of the bug
Hi, I am running hicar on my Arabidopsis thaliana hicar data. But it seems that there is a error about ATACSeqQC
nextflow run /data5/sgd_data/biosoft/nf-core/nf-core-hicar-dev/workflow ...
bug
shangguandong1996
- 1
- Opened on Jul 1, 2022
- #72
Description of feature
Hi. I am using the hicar pipeline, I have downloaded the whole hicar image. But it seems that my linux server have bad
internet connection with github, so that every time I try ...
enhancement
- 2
- Opened on Jul 1, 2022
- #71
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