You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I found that the .hic file generated by hicar could not be opened by juicebox, so do the .hic file downloaded from https://nf-co.re/hicar/results#hicar/results-429087d2b13e59c3edd2e71b8005c1adc5bbb7bb/cooler/hic/, do you have any ideas? Thanks!
The error log is:
"INFO [2023-03-01 11:25:40,463] [DirectoryManager.java:72] Fetching user directory...
INFO [2023-03-01 11:25:40,482] [DirectoryManager.java:169] IGV Directory: C:\Users\zhang\igv
INFO [2023-03-01 11:25:40,889] [CommandListener.java:86] Listening on port 30000
ERROR [2023-03-01 11:26:02,486] [DatasetReaderV2.java:272] Error reading dataset
java.io.EOFException
at htsjdk.tribble.util.LittleEndianInputStream.readString(LittleEndianInputStream.java:119)
at juicebox.data.DatasetReaderV2.read(DatasetReaderV2.java:194)
at juicebox.gui.SuperAdapter.unsafeLoad(SuperAdapter.java:388)
at juicebox.gui.SuperAdapter.unsafeLoadWithTitleFix(SuperAdapter.java:483)
at juicebox.gui.SuperAdapter$1.run(SuperAdapter.java:470)
at juicebox.MainWindow$3.call(MainWindow.java:194)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
ERROR [2023-03-01 11:26:02,489] [SuperAdapter.java:490] Error loading hic file
java.io.EOFException
at htsjdk.tribble.util.LittleEndianInputStream.readString(LittleEndianInputStream.java:119)
at juicebox.data.DatasetReaderV2.read(DatasetReaderV2.java:194)
at juicebox.gui.SuperAdapter.unsafeLoad(SuperAdapter.java:388)
at juicebox.gui.SuperAdapter.unsafeLoadWithTitleFix(SuperAdapter.java:483)
at juicebox.gui.SuperAdapter$1.run(SuperAdapter.java:470)
at juicebox.MainWindow$3.call(MainWindow.java:194)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)"
The text was updated successfully, but these errors were encountered:
This error may caused by version conflict of juicebox. Please check the version of juicebox in pipeline you used and the juicebox version for visualization.
You can always reopen this issue when you still have problem with that.
I found that the .hic file generated by hicar could not be opened by juicebox, so do the .hic file downloaded from https://nf-co.re/hicar/results#hicar/results-429087d2b13e59c3edd2e71b8005c1adc5bbb7bb/cooler/hic/, do you have any ideas? Thanks!
The error log is:
"INFO [2023-03-01 11:25:40,463] [DirectoryManager.java:72] Fetching user directory...
INFO [2023-03-01 11:25:40,482] [DirectoryManager.java:169] IGV Directory: C:\Users\zhang\igv
INFO [2023-03-01 11:25:40,889] [CommandListener.java:86] Listening on port 30000
ERROR [2023-03-01 11:26:02,486] [DatasetReaderV2.java:272] Error reading dataset
java.io.EOFException
at htsjdk.tribble.util.LittleEndianInputStream.readString(LittleEndianInputStream.java:119)
at juicebox.data.DatasetReaderV2.read(DatasetReaderV2.java:194)
at juicebox.gui.SuperAdapter.unsafeLoad(SuperAdapter.java:388)
at juicebox.gui.SuperAdapter.unsafeLoadWithTitleFix(SuperAdapter.java:483)
at juicebox.gui.SuperAdapter$1.run(SuperAdapter.java:470)
at juicebox.MainWindow$3.call(MainWindow.java:194)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
ERROR [2023-03-01 11:26:02,489] [SuperAdapter.java:490] Error loading hic file
java.io.EOFException
at htsjdk.tribble.util.LittleEndianInputStream.readString(LittleEndianInputStream.java:119)
at juicebox.data.DatasetReaderV2.read(DatasetReaderV2.java:194)
at juicebox.gui.SuperAdapter.unsafeLoad(SuperAdapter.java:388)
at juicebox.gui.SuperAdapter.unsafeLoadWithTitleFix(SuperAdapter.java:483)
at juicebox.gui.SuperAdapter$1.run(SuperAdapter.java:470)
at juicebox.MainWindow$3.call(MainWindow.java:194)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)"
The text was updated successfully, but these errors were encountered: