Skip to content

Issues: nf-core/eager

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

44 Open 393 Closed
44 Open 393 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

DSL2: Sharding tweaks DSL2
#1104 opened Dec 20, 2024 by TCLamnidis
DSL2: New test config structure DSL2 enhancement New feature or request
#1103 opened Dec 20, 2024 by jfy133
@jfy133 @TCLamnidis
1
Edit distance plots for mapped reads enhancement New feature or request
#1101 opened Dec 6, 2024 by marcel-keller
1
DSL2: Options for different adapters for ssDNA and dsDNA libraries within the same run. DSL2 enhancement New feature or request
#1091 opened Oct 1, 2024 by TCLamnidis
DSL2: Ensure that all sharded fastQs make it into mapping. bug Something isn't working DSL2
#1089 opened Sep 27, 2024 by TCLamnidis 3.0 Augsburg
3
DSL2: Add bamRefine as a damage manipulation alternative? enhancement New feature or request
#1087 opened Sep 19, 2024 by TCLamnidis
1
DSL2 Metagenomics - Update the test-datasets and input-files for test profiles DSL2 small_fix
#1085 opened Sep 6, 2024 by merszym
@merszym @ilight1542
DSL2: Metagenomics: Allow Skip-pairmerging before running metagenomics DSL2 enhancement New feature or request
#1084 opened Sep 6, 2024 by merszym
@merszym @ilight1542
1
DSL2: Genotyping on multiple snp sets in one run? DSL2 enhancement New feature or request
#1077 opened Jun 21, 2024 by TCLamnidis 3.0 Augsburg
1
DSL2: Add 'output' documention for mtnucratio documentation DSL2
#1070 opened May 17, 2024 by scarlhoff
DSL2: Add MultiVCFAnalyzer DSL2 enhancement New feature or request
#1069 opened May 17, 2024 by aidaanva
@aidaanva
DSL2: Ensure modules config consistency: all modules have an ext.prefix and publishDir attribute, and follow conventions. DSL2
#1066 opened Apr 26, 2024 by TCLamnidis 3.0 Augsburg
Fix description of mt/n ratio in docs documentation DSL1 DSL2
#1055 opened Feb 28, 2024 by TCLamnidis 3.0 Augsburg
Throw warning when genotyping with pileupcaller on single-stranded libraries that were PE and not collapsed DSL2
#1054 opened Feb 23, 2024 by TCLamnidis
DSL2: Allow changing parameters for BWA mem. DSL2 enhancement New feature or request
#1026 opened Oct 19, 2023 by TCLamnidis
DSL2: Add HapCON? DSL2 enhancement New feature or request
#1015 opened Jul 21, 2023 by TCLamnidis
DSL2: Add to MultiQC support for coverage_across_reference.txt file enhancement New feature or request
#1001 opened Jun 23, 2023 by jfy133
DSL2: Print Nuclear Contamination JSON N/A value bug Something isn't working DSL2
#995 opened Jun 7, 2023 by TCLamnidis 3.0 Augsburg
2
DSL2: Ensure to document input run BAMs will _not_ be merged with FASTQ libraries even if same name DSL2 enhancement New feature or request
#994 opened Jun 2, 2023 by jfy133 3.0 Augsburg
2
DSL2: PMDTools for estimation vs manipulation of damage DSL2
#989 opened May 26, 2023 by TCLamnidis
DSL2: Add test profile that forces ALL the possible merging steps for FastQ and BAM inputs, to ensure no file name collisions happen. DSL2
#986 opened May 25, 2023 by TCLamnidis 3.0 Augsburg
DSL2: Add lane attribute to BAM inputs bug Something isn't working DSL2
#985 opened May 25, 2023 by TCLamnidis
1 of 3 tasks
3.0 Augsburg
@jfy133
DSL2: ensure versions.yml aren't published DSL2 enhancement New feature or request
#979 opened May 11, 2023 by scarlhoff 3.0 Augsburg
1
DSL2: Provide correct data for upload to sequencing archives (e.g. ENA) DSL2 enhancement New feature or request
#974 opened May 2, 2023 by TCLamnidis 3.0 Augsburg
DSL2L: Add support for specifying platform in input TSV DSL2 enhancement New feature or request
#970 opened Apr 21, 2023 by jfy133 3.0 Augsburg
ProTip! Updated in the last three days: updated:>2024-12-21.