v1.0 - Helpful Hydra - [2025-06-19]

Added

Initial release of nf-core/createtaxdb, created with the nf-core template.

Adds database building support for the following tools:

• (Primarily) nucleotide based
  • Bracken (added by @alxndrdiaz)
  • Centrifuge (added by @jfy133)
  • ganon (added by @jfy133)
  • KMCP (added by @alxndrdiaz)
  • KrakenUniq (added by @jfy133)
  • Kraken2 (added by @alxndrdiaz)
  • MALT (added by @jfy133 and @LilyAnderssonLee)
• (Primarily) protein based
  • DIAMOND (added by @jfy133)
  • Kaiju (added by @jfy133)

Additional optimisation when running with very large number of genomes by @BioWilko.

Tool	Old Version	New Version
Bracken		3.1
Centrifuge		1.0.4.2
DIAMOND		2.1.12
find		4.6.0
ganon		2.1.0
kaiju		1.10.0
KMCP		0.9.4
Kraken2		2.1.5
KrakenUniq		1.0.4
MALT		0.6.2
pigz		2.8
seqkit		2.9.0
tar		1.34
MultiQC		1.29
p7zip		16.02

Fixed

Dependencies

Deprecated