-
Notifications
You must be signed in to change notification settings - Fork 30
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
update nf-core/umitools/extract module - fixes #117 #118
Merged
CharlotteAnne
merged 23 commits into
nf-core:feat-2-0
from
slebedeva:117-update-umitools-extract
Mar 9, 2025
Merged
update nf-core/umitools/extract module - fixes #117 #118
CharlotteAnne
merged 23 commits into
nf-core:feat-2-0
from
slebedeva:117-update-umitools-extract
Mar 9, 2025
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Also updated the correct path to the test samplesheet in conf/test.config. |
Remove "test_full_small" from testing suite until we update this
remove one unused local module with incorrect def
…eak callers; also remove transcriptome peaks, reason: test.config specifies skip_transcriptome = true
excellent work @slebedeva !!! |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
PR checklist
nextflow run . -profile test,docker
).This fixes #117 by updating the nf-core/umitools/extract module. The test suite passes with
nextflow run . -profile test,singularity
.