Manage AWS Batch Unscheduled jobs #5936
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Signed-off-by: jorgee <[email protected]> AWS unscheduled jobs management Signed-off-by: jorgee <[email protected]>
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…if-a-compute-env-does-not-meet-the-criteria
Signed-off-by: Paolo Di Tommaso <[email protected]>
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Should this be "unscheduled" or "unschedulable" or "misconfigured"? |
pditommaso
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Apr 7, 2025
plugins/nf-amazon/src/main/nextflow/cloud/aws/config/AwsBatchConfig.groovy
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Co-authored-by: Chris Hakkaart <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]>
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I have received some suggestions to include other such as |
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Contrary to what I said during our call, let's add |
Co-authored-by: Chris Hakkaart <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]>
…if-a-compute-env-does-not-meet-the-criteria
Signed-off-by: Paolo Di Tommaso <[email protected]>
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Adjusted naming, added docs & scope options, added Please have a look and merge. |
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Apr 13, 2025
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…if-a-compute-env-does-not-meet-the-criteria
Signed-off-by: Ben Sherman <[email protected]>
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--------- Signed-off-by: jorgee <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]> Signed-off-by: Ben Sherman <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]> Co-authored-by: Chris Hakkaart <[email protected]> Co-authored-by: Ben Sherman <[email protected]> Signed-off-by: Dietmar Rieder <[email protected]>
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--------- Signed-off-by: jorgee <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]> Signed-off-by: Ben Sherman <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]> Co-authored-by: Chris Hakkaart <[email protected]> Co-authored-by: Ben Sherman <[email protected]>
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--------- Signed-off-by: jorgee <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]> Signed-off-by: Ben Sherman <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]> Co-authored-by: Chris Hakkaart <[email protected]> Co-authored-by: Ben Sherman <[email protected]>
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close #5897
Detects when a job is in an unscheduled state by checking if the reason status contains
MISCONFIGURED:JOB_RESOURCE_REQUIREMENTBy default, it only prints a warning when the condition is found.
A new
aws.batch.killUnscheduledflag is added in the configuration to change the default behaviour. Whentrue, Nextflow kills the unscheduled job and throws a ProcessException with the reason.