[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

.pre-commit-config.yaml

@@ -19,4 +19,3 @@ repos:
     - id: ruff
       args: [--fix, --exit-non-zero-on-fix]
     - id: ruff-format
-

.vscode/settings.json

@@ -4,4 +4,4 @@
     ],
     "python.testing.unittestEnabled": false,
     "python.testing.pytestEnabled": true,
-}
+}

docs/conf.py

@@ -4,6 +4,7 @@
 # https://www.sphinx-doc.org/en/master/usage/configuration.html
 import os
 import sys
+
 import versioningit
 
 sys.path.insert(0, os.path.abspath("../src"))
@@ -59,7 +60,9 @@
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
-html_theme = "alabaster"  # "sphinx_rtd_theme", please add corresponding package to environment.yml if you want to use it
+html_theme = (
+    "alabaster"  # "sphinx_rtd_theme", please add corresponding package to environment.yml if you want to use it
+)
 autosummary_generate = True
 
 # Napoleon settings

scripts/HoV6Sn6_contour.py

@@ -1,4 +1,5 @@
 import matplotlib.pyplot as plt
+
 from tavi.data.spice_to_nexus import convert_spice_to_nexus
 from tavi.data.tavi import TAVI
 from tavi.plotter import Plot2DManager

scripts/test_fit.py

@@ -1,4 +1,5 @@
 import matplotlib.pyplot as plt
+
 from tavi.data.fit import Fit
 from tavi.data.tavi import TAVI
 from tavi.plotter import Plot1DManager

scripts/test_fit_group.py

@@ -1,4 +1,5 @@
 import matplotlib.pyplot as plt
+
 from tavi.data.tavi import TAVI
 from tavi.plotter import Plot1DManager, Plot2DManager
 

src/tavi/configuration.py

@@ -4,9 +4,9 @@
 
 import os
 import shutil
-
 from configparser import ConfigParser
 from pathlib import Path
+
 from mantid.kernel import Logger
 
 logger = Logger("PACKAGENAME")

src/tavi/data/scan_reader.py

@@ -125,7 +125,6 @@ class ScanData(NamedTuple):
 
 
 def nexus_entry_to_scan(nexus_entry):
-
     def get_string(entry_string):
         try:
             return str(nexus_entry[entry_string].asstr()[...])

src/tavi/data/spice_to_nexus.py

@@ -109,7 +109,6 @@ def _read_spice_ub(ub_file_name):
 
 
 def _format_spice_header(headers):
-
     formatted_headers = {}
 
     exp_str = ["scan_title", "users", "local_contact", "experiment"]
@@ -400,7 +399,6 @@ def _nexus_sample(nxsample, das_logs, sample_config_params=None):
     nxsample.attrs["EX_required"] = "true"
 
     try:
-
         nxsample.create_dataset(name="name", data=das_logs.attrs["samplename"], maxshape=None)
         nxsample["name"].attrs["type"] = "NX_CHAR"
         nxsample["name"].attrs["EX_required"] = "true"
@@ -671,9 +669,7 @@ def convert_spice_ub_to_nexus(
     """Convert all UBConf files into one NeXus entry named UBConf.h5"""
 
     if verbose:
-        disp_str = (
-            f"Converting SPICE UBConf files at {path_to_spice_folder} to an NeXus entry at {path_to_hdf5_folder}"
-        )
+        disp_str = f"Converting SPICE UBConf files at {path_to_spice_folder} to an NeXus entry at {path_to_hdf5_folder}"
         print(disp_str)
 
     p = Path(path_to_spice_folder)
@@ -683,7 +679,6 @@ def convert_spice_ub_to_nexus(
     ub_conf_dicts = {ub_file.parts[-1].split(".")[0]: _read_spice_ub(ub_file) for ub_file in ub_files_all}
 
     with h5py.File(path_to_hdf5_folder + "UBConf.h5", "w") as root:
-
         for ub_name, ub_data in ub_conf_dicts.items():
             ub_entry = root.create_group(ub_name)
             ub_entry.attrs["NX_class"] = "NXcollection"
@@ -743,7 +738,6 @@ def convert_spice_scan_to_nexus(
         sample_config_params = None
 
     with h5py.File(scan_name, "w") as nxentry:
-
         # create SPICElogs
         spice_logs = nxentry.create_group("SPICElogs")
         spice_logs.attrs["NX_class"] = "NXcollection"

src/tavi/instrument/instrument_params/cg4c.json

@@ -70,4 +70,4 @@
         "v_post_sample": 600,
         "v_post_ana": 600
     }
-}
+}

src/tavi/instrument/instrument_params/hb1a.json

@@ -69,4 +69,4 @@
         "v_post_sample": 600,
         "v_post_ana": 600
     }
-}
+}

src/tavi/instrument/instrument_params/hb3.json

@@ -73,4 +73,4 @@
         "v_post_sample": 300,
         "v_post_ana": 600
     }
-}
+}

src/tavi/instrument/instrument_params/takin_test.json

@@ -72,4 +72,4 @@
         "v_post_sample": 30,
         "v_post_ana": 30
     }
-}
+}

src/tavi/instrument/resolution/reso_ellipses.py

@@ -1,9 +1,10 @@
+import matplotlib.pyplot as plt
 import numpy as np
 import numpy.linalg as la
-import matplotlib.pyplot as plt
-from mpl_toolkits.axisartist import Subplot, Axes
+from mpl_toolkits.axisartist import Axes, Subplot
 from mpl_toolkits.axisartist.grid_finder import MaxNLocator
 from mpl_toolkits.axisartist.grid_helper_curvelinear import GridHelperCurveLinear
+
 from tavi.utilities import *
 
 np.set_printoptions(floatmode="fixed", precision=4)
@@ -141,7 +142,6 @@ def generate_plot(self, ax, c="black", linestyle="solid"):
         pts = self.generate_ellipse()
 
         if self.grid_helper is None:
-
             s = ax.plot(
                 pts[0],
                 pts[1],
@@ -196,7 +196,6 @@ class ResoEllipsoid(object):
     g_eps = 1e-8
 
     def __init__(self):
-
         self.STATUS = None
         self.q = None
         self.hkl = None