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Mukamel Lab Team

Mukamel lab at UCSD

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  1. scmdb_py_dev scmdb_py_dev Public

    Development version of single cell DNA methylation python browser

    HTML 3 6

  2. scmdb_py scmdb_py Public

    Single cell methylation data browser

    Python 4

  3. deepcpg deepcpg Public

    Forked from FangmingXie/deepcpg

    Deep neural networks for predicting CpG methylation

    Python

  4. deep_analyzer deep_analyzer Public

    performance analyzer for deepcpg experiments

    Python

  5. snmcseq_dev snmcseq_dev Public

    Forked from mukamel-lab/snmcseq

    Tools for computational analysis of single nuclei methylC-Seq data, as described in Luo, Keown et al. (2017)

    Python

  6. loompy loompy Public

    Forked from linnarsson-lab/loompy

    Python implementation of the Loom file format - http://loompy.org

    Python

Repositories

Showing 7 of 7 repositories
  • scmdb_py_dev Public

    Development version of single cell DNA methylation python browser

    mukamel-lab-team/scmdb_py_dev’s past year of commit activity
    HTML 3 6 2 16 Updated Sep 8, 2023
  • scmdb_py Public

    Single cell methylation data browser

    mukamel-lab-team/scmdb_py’s past year of commit activity
    Python 0 4 0 6 Updated Dec 7, 2022
  • snmcseq_dev Public Forked from mukamel-lab/snmcseq

    Tools for computational analysis of single nuclei methylC-Seq data, as described in Luo, Keown et al. (2017)

    mukamel-lab-team/snmcseq_dev’s past year of commit activity
    Python 0 3 0 0 Updated Feb 11, 2022
  • SingleCellFusion Public Forked from ejarmand/SingleCellFusion

    Methods for integrating multimodal single cell sequencing data, including transcriptome (RNA-Seq) and epigenome (DNA methylation, ATAC-Seq)

    mukamel-lab-team/SingleCellFusion’s past year of commit activity
    Python 0 GPL-2.0 3 0 0 Updated Nov 15, 2019
  • loompy Public Forked from linnarsson-lab/loompy

    Python implementation of the Loom file format - http://loompy.org

    mukamel-lab-team/loompy’s past year of commit activity
    Python 0 BSD-2-Clause 37 0 0 Updated Nov 30, 2018
  • deep_analyzer Public

    performance analyzer for deepcpg experiments

    mukamel-lab-team/deep_analyzer’s past year of commit activity
    Python 0 0 0 0 Updated Aug 14, 2017
  • deepcpg Public Forked from FangmingXie/deepcpg

    Deep neural networks for predicting CpG methylation

    mukamel-lab-team/deepcpg’s past year of commit activity
    Python 0 MIT 70 0 0 Updated Aug 10, 2017

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