Address issue #33, check compatibility and update CI #3
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build wheels | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 6 | |
| matrix: | |
| python-version: ["3.9","3.10","3.11", "3.12"] | |
| os: | |
| - macOS-latest | |
| - ubuntu-latest | |
| - windows-latest | |
| include: | |
| - os: ubuntu-latest | |
| path: ~/.cache/pip | |
| - os: macos-latest | |
| path: ~/Library/Caches/pip | |
| - os: windows-latest | |
| path: ~\AppData\Local\pip\Cache | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ${{ matrix.path }} | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-activate-base: true | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: test | |
| - name: Install required packages | |
| run: | | |
| conda config --add channels conda-forge | |
| # conda install -yq conda-build jinja2 conda-verify | |
| if [[ "$RUNNER_OS" == "Linux" ]]; then | |
| conda install -yq zlib libstdcxx-ng h5py | |
| else | |
| conda install -yq zlib h5py | |
| fi | |
| python -m pip install --upgrade pip | |
| # Used to host cibuildwheel | |
| - name: Pip install and build wheels | |
| run: | | |
| # python -m pip install cibuildwheel | |
| # python -m cibuildwheel --output-dir ciwheelhouse | |
| python -m pip install --upgrade wheel | |
| pip wheel --wheel-dir wheelhouse . | |
| - name: Test wheels | |
| run: | | |
| pip install wheelhouse/msmbuilder2022*.whl | |
| # conda install -yq numdifftools hmmlearn | |
| pip install numdifftools hmmlearn statsmodels | |
| pip install pytest | |
| pip install pytest-cov | |
| mkdir ../../pkgs | |
| cp -r msmbuilder/tests ../../pkgs | |
| cd ../../pkgs | |
| python tests/data_init.py | |
| pytest tests/ -v | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-wheels-${{ matrix.os }}-${{ matrix.python-version }}-${{ strategy.job-index }} | |
| path: wheelhouse/msmbuilder2022*.whl | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: cibw-wheels-${{ matrix.os }}-${{ matrix.python-version }}-${{ strategy.job-index }} |