example_facets_preview.json

{
  "repo": [
    {
      "name": "CCS IMPACT facets repository",
      "manifest_file": "/juno/work/ccs/shared/resources/impact/facets/manifests/impact_facets_manifest_latest.txt.gz",
      "tumor_id_format": "^P-\\d{7}-T\\d+-IM\\d(,P-\\d{7}-T\\d+-IM\\d)*$",
      "counts_file_format": "countsMerged____{sample_id}.dat.gz"
    },
    {
      "name": "CB Test Repo",
      "manifest_file": "/juno/work/ccs/bandlamc/other_stuff/facets_qc/facets_sandbox/manifests/impact_facets_qc_2020_02_17b.txt.gz",
      "tumor_id_format": "",
      "counts_file_format": "countsMerged____{sample_id}.dat.gz"
    }
  ],
  "watcher_dir": "/juno/work/ccs/shared/software/refit_watcher/",
  "facets_lib": [
    {
      "version": "0.5.6",
      "lib_path": "/juno/work/ccs/shared/software/R_libs/facets/0.5.6/"
    },
    {
      "version": "0.5.14",
      "lib_path": "/juno/work/ccs/shared/software/R_libs/facets/0.5.14/"
    },
    {
      "version": "0.6.0",
      "lib_path": "/juno/work/ccs/shared/software/R_libs/facets/0.6.0/"
    }
  ],
  "verify_sshfs_mount" : "juno",
  "r_script_path" : "/opt/common/CentOS_7-dev/bin/Rscript",
  "facets_suite_lib": "/juno/work/ccs/shared/software/R_libs/facetsSuite/2.0.8/",
  "facets_suite_run_wrapper": "/juno/work/ccs/shared/software/R_libs/facetsSuite/2.0.6/run-facets-wrapper.R",
  "facets_qc_script": "/juno/work/ccs/bandlamc/git/facets-preview/facets_qc/v1.0/facets_fit_qc.R"
}