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fixed bash wrapper error with Java version (as in MIXCR & mitools) #131

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fixed bash wrapper error with Java version (as in MIXCR & mitools) #131

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23 changes: 18 additions & 5 deletions vdjtools
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,24 @@

java="java"

sedString="s/.*1\.\(.*\)\..*/\1/"
jVersion=$($java -version 2>&1 | grep version | awk '{ print $3 }' | sed $sedString)
if [[ $jVersion -lt 7 ]];
then
echo "Wrong java version. Please use Java 7 or higher."
sedString1="s/\s*\([^.]*\)\..*/\1/"
sedString2="s/.*1\.\(.*\)\..*/\1/"
jVersion=$($java -version 2>&1 | grep version | awk '{ print $3 }' | sed 's:"::g')
jVersion1=$(echo "$jVersion" | sed $sedString1)
if [[ jVersion1 -eq 1 ]]; then
jVersion2=$(echo "$jVersion" | sed $sedString2)
if [[ $jVersion2 -lt 7 ]];
then
echo "Wrong version of java. Please use Java 7 or higher."
exit 1
fi

if [[ $jVersion2 -lt 8 ]];
then
echo "WARNING: Several issues have been detected while using Java 7. Please consider updateing to Java 8 or higher."
fi
elif [[ jVersion1 -lt 9 ]]; then
echo "Wrong version of java. Please use Java 7 or higher."
exit 1
fi

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