powerly v1.8.6

What's Changed

• Fix HTML syntax (semantic) errors by @mihaiconstantin in #32

Fixed

• Remove invalid HTML syntax from documented functions (i.e., div elements nested inside p elements). See #30 (i.e., the reply by @mihaiconstantin) for more details.

Full Changelog: v1.8.5...v1.8.6

powerly v1.8.5

What's Changed

• Fix CRAN HTML validation error by @mihaiconstantin in #31

Fixed

• Fix HTML validation problems during the CRAN checks. Closes #30.

Full Changelog: v1.8.4...v1.8.5

powerly v1.8.4

What's Changed

• Refactor styles and improve support for narrow screens by @mihaiconstantin in #27
• Update breakpoints for mobile views by @mihaiconstantin in #28
• Add documentation for Reference Section by @mihaiconstantin in #29

Added

• Add navigation bar and sidebar links under Reference for exported package functions and S3 methods.
• Enable automatic registration for .vue components in /docs/.vuepress/components/.
• Add component Markdown.vue for rendering reusable markdown.
• Add documentation content for functions powerly, validate, and generate_model.
• Add documentation content for S3 methods plot.Method, plot.Validation, and summary.

Changed

• Refactor styles and improve readability for narrow screens.
• Replace incorrect feature image for Step 1.
• Update CSS breakpoints for mobile views.

Full Changelog: v1.8.3...v1.8.4

powerly v1.8.3

What's Changed

• Add package documentation via VuePress by @mihaiconstantin in #22
• Fix documentation build process by @mihaiconstantin in #24
• Update package to account for docs/ by @mihaiconstantin in #26

Added

• Add starter package documentation via VuePress. The deployed documentation files can be accessed at powerly.dev.

Changed

• Add references to the online documentation in README.md file.
• Moved image assets from inst/ under docs/.
• Simplify ASCII console logo to include the domain name for the online documentation.

Full Changelog: v1.8.2...v1.8.3

powerly v1.8.2

What's Changed

• Fix NEWS.md format for CRAN parsing by @mihaiconstantin in #21

Fixed

• Remove square brackets from version numbers in NEWS.md to allow CRAN to parse the version information.

Full Changelog: v1.8.1...v1.8.2

powerly v1.8.1

What's Changed

• Update GitHub workflow to enable manual trigger by @mihaiconstantin in #20

Changed

• Add option to run GitHub workflow manually.

Full Changelog: v1.8.0...v1.8.1

powerly v1.8.0

What's Changed

• Improve GGM creation and data generation by @mihaiconstantin in #18

---

Added

• Add more arguments for generating partial correlation matrices (i.e., in line with Yin and Li (2011; see reference below). The new arguments are positive (i.e., for the proportion of positive edges), range (i.e., for the interval from which to sample values for the partial correlations), and constant (i.e., to vary the magnitude of the partial correlations). See Yin and Li (2011) for a description of the generating algorithm.
• Add functionality to resample GgmModel data when variables with SD = 0 are detected.

Changed

• Update documentation to include the new arguments for generating a GGM.
• Update GGM data generation and estimation tests.

References

• Yin, J., and Li, H. (2011). A sparse conditional gaussian graphical model for analysis of genetical genomics data. The annals of applied statistics, 5(4), 2630.

Full Changelog: v1.7.4...v1.8.0

powerly v1.7.4

Added

• Add duration field to StepTwo class to record the execution time for the
  spline fitting procedure
• Add CNAME for apex domain https://powerly.dev served via GitHub Pages.

Fixed

• Fix missing import for mvnorm package (#11). Closes #5.
• Fix missing number of cores in Backend when more cores than available were
  requested (#12). Closes #2.
• Fix legend overlapping spline confidence bands for StepThree plot (#13).
  Closes #3.
• Fix recording and reporting of Method and step classes execution time (#15).
  The duration is now recorded in seconds. Closes #9.

Removed

• Remove dev branch from all GitHub workflows (#14). Switched to the
  GitHub flow. Closes #4.

Full Changelog: v1.7.3...v1.7.4

powerly release v1.7.3

Improvements

• Update badges order in README.md and removed open issues badge.

• Fix typos in the NEWS file.

powerly release v1.7.2

Improvements

• Update GGM estimation test to check if the estimation fails when variables with zero standard deviation are present in the generated data.

• Update GGM estimation to fail when the generated data contains at least one variable that has a standard deviation equal to zero (i.e., as a result of generating data with a sample size value that is too low).

• Add GitHub badges with latest release version and number of open issues.

Bug fixes

• Add tolerance (i.e., 0.0000001) for test checking whether the spline coefficients are estimated correctly.

• Fix test for the updating of the bounds of a Range instance to run only when the the 2.5th and 97.5th selected sample sizes are different quantities.

• Fix bug in GGM data generating test where the number of nodes to generate data for were incorrectly sampled.