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159 Open 1,539 Closed
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Issues list

[FEATURE REQUEST] Different gene caller option(s) for anvi-gen-contigs-database small project
#2298 opened Jul 9, 2024 by ivagljiva
@meren
5 👍 3
[FEATURE REQUEST] Color scale(s) in the SVG output
#2279 opened Jun 6, 2024 by FlorianTrigodet
@metehaansever
1 👍 2
Display genomic context for genes in a protein cluster design feature request interface pangenomic workflow priority
#726 opened Feb 2, 2018 by brymerr921
@ozcan
4 👍 2
[DISCUSSION] Structure pangenomes feature request
#2135 opened Sep 29, 2023 by mschecht
@meren @mschecht
3 👍 2
[BUG] Most annotations from anvi-run-cazymes have undefined ('-') accession numbers
#2148 opened Oct 15, 2023 by ivagljiva
@mschecht @ivagljiva
5 👍 1
Anvi'o in a Live USB Stick? feature request small project
#808 opened Apr 16, 2018 by meren
👍 1
[FEATURE REQUEST] Transparent color for NA value in the interface interface
#1962 opened Jul 20, 2022 by FlorianTrigodet
👍 1
[DISCUSSION] Common misconceptions and mistakes for anvi'o beginners that we should clarify in a blog post
#2230 opened Feb 26, 2024 by ivagljiva
@ivagljiva @FlorianTrigodet
8 👍 1
[FEATURE] add legend to anvio displays with intensity setting feature request
#1652 opened Jan 26, 2021 by efogarty11
@matthewlawrenceklein
1 👍 1
[FEATURE] Normalize by numerical layer data feature request
#1629 opened Jan 7, 2021 by ivagljiva
👍 1
There is too much redundancy between anvi-get-aa-counts and anvi-get-codon-frequencies design small project
#1587 opened Dec 9, 2020 by ekiefl
👍 1
Hi-C data integration into anvi'o contigs database feature interface small project
#1073 opened Dec 15, 2018 by meren
1 👍 1
[DISCUSSION] Methylation processing in anvio
#2152 opened Oct 23, 2023 by Ge0rges
5 👍 1
anvi-interactive - normalization of the layers data is not working interface small project
#1342 opened Jan 31, 2020 by FlorianTrigodet
3
Bug in checking for dependencies in anvi-script-visualize-split-coverages
#1306 opened Nov 26, 2019 by mooreryan
@mooreryan
anvi-export-locus cannot handle non-sequential gene caller ids bug
#1302 opened Nov 18, 2019 by mschecht
@mschecht
5
Interactive interface should come up with better defaults for extreme cases enhancement interface small project
#698 opened Jan 19, 2018 by meren
1
Move taxonomy tests into the unit tests directory small project tests
#1266 opened Oct 15, 2019 by meren
anvi-get-split-coverages should report sample background colors in a separate file feature request feature small project
#1172 opened Jun 14, 2019 by meren
2
Procedural color palette generation for Phylogenomics enhancement phylogenomic workflow
#740 opened Feb 13, 2018 by ozcan
@ozcan
Predict tRNAs in genome bins, report as possible completion metric contigs database core feature request metagenomic workflow small project
#786 opened Mar 15, 2018 by brymerr921
1
[FEATURE REQUEST] anvi-compute-rarefaction-curves csv
#2408 opened Mar 6, 2025 by Mikes92
Add bootstrap values to tree branches in anvi'o interactive interface enhancement feature request interface phylogenomic workflow
#1045 opened Nov 22, 2018 by ShaiberAlon
@ozcan
4
An interactive interface for the anvi'o workflow manager feature small project snakemake workflows
#1037 opened Nov 20, 2018 by meren
anvi-get-sequences-for-hmm-hits should warn the user when genomes are ommited contigs database enhancement feature request small project
#963 opened Sep 5, 2018 by ShaiberAlon
@meren @ShaiberAlon
1
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