Issues: merenlab/anvio
Issues list
[FEATURE REQUEST] Update anvi-setup-ncbi-cogs to Support COG24
small project
#2382
opened Dec 19, 2024 by
renyx-1
[BUG]
anvi-run-hmms does not accurately detect 5S rRNA
bug
gene functions
small project
#2344
opened Sep 20, 2024 by
philipwoods
[FEATURE REQUEST] Genome redundancy estimations compatible with introns
feature request
#2337
opened Sep 9, 2024 by
tdelmont
[FEATURE REQUEST] Different gene caller option(s) for
anvi-gen-contigs-database
small project
#2298
opened Jul 9, 2024 by
ivagljiva
[BUG] Eggnog mapper not running in workflow, works fine manually in same conda env
#2234
opened Mar 1, 2024 by
timternetnet
[FEATURE REQUEST] Make a better anvi-script-gen-short-reads
#2082
opened May 22, 2023 by
FlorianTrigodet
[FEATURE REQUEST] Adding the
ecophylo and trnaseq workflows to anvi'o docs, and more
snakemake workflows
#1986
opened Sep 19, 2022 by
meren
3 tasks
[FEATURE REQUEST] add and remove bins from collections
feature request
#1951
opened Jul 4, 2022 by
ptsourkas
[FEATURE REQUEST] anvi-script-gen-functional-hits-matrix-across-genomes
#1904
opened Mar 23, 2022 by
tdelmont
[FEATURE] Add --annotation-source-for-per-split-summary to anvi-display-pan
feature request
#1857
opened Dec 10, 2021 by
mschecht
[BUG] anvi-split store full contigs instead of selected splits
bug
#1843
opened Nov 22, 2021 by
FlorianTrigodet
[FEATURE] Inspect Page - Get sequence from contig coordinates
feature
interface
#1842
opened Nov 22, 2021 by
matthewlawrenceklein
[FEATURE] Genome view needs a new anvi'o database and its own bottle routes
core
design
#1778
opened Aug 6, 2021 by
meren
[FEATURE] anvi-get-sequences-for-functions?
design
feature request
gene functions
#1750
opened Jun 7, 2021 by
dspeth
Looking towards moving beyond domain-level SCG collections
contigs database
core
design
enhancement
feature
#1747
opened May 27, 2021 by
AstrobioMike
[FEATURE] Adding prevalence/abundance filter for gene clusters to functional enrichment script
feature request
#1731
opened Apr 30, 2021 by
ts-dangelo
[BUG] anvi-setup-scg-databases --scgs-taxonomy-data-dir <PATH> doesn't pass <PATH> to diamond
#1534
opened Oct 22, 2020 by
jthiels
Error running anvi-dereplicate-genomes on multiple collections from one metagenome profile
feature request
#1397
opened Apr 4, 2020 by
brymerr921
A bug when using the anvi-run-ncbi-cogs command to set up the COG distribution
bug
#1393
opened Apr 2, 2020 by
zhangchiqian
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