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  1. SibeliaZ SibeliaZ Public

    A fast whole-genome aligner based on de Bruijn graphs

    C++ 147 19

  2. TwoPaCo TwoPaCo Public

    A fast constructor of the compressed de Bruijn graph from many genomes

    C++ 40 10

  3. UST UST Public

    C++ 25 3

  4. vargeno vargeno Public

    Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

    C++ 20 4

  5. BubbZ BubbZ Public

    C++ 15 1

  6. bloomtree-allsome bloomtree-allsome Public

    Forked from Kingsford-Group/bloomtree

    Sequence Bloom Trees with All/Some split

    C++ 11 2

Repositories

Showing 10 of 29 repositories
  • kmer-stats-repeat_Reproduce Public

    Reproduce the figures in the paper

    medvedevgroup/kmer-stats-repeat_Reproduce’s past year of commit activity
    C++ 0 0 0 0 Updated May 14, 2025
  • Repeat-Aware_Substitution_Rate_Estimator Public

    The tool to estimate substitution rate based on k-spectrum

    medvedevgroup/Repeat-Aware_Substitution_Rate_Estimator’s past year of commit activity
    C++ 0 0 0 0 Updated May 14, 2025
  • internal Public
    medvedevgroup/internal’s past year of commit activity
    0 0 0 0 Updated Apr 28, 2025
  • SibeliaZ Public

    A fast whole-genome aligner based on de Bruijn graphs

    medvedevgroup/SibeliaZ’s past year of commit activity
    C++ 147 19 36 0 Updated Feb 10, 2025
  • TwoPaCo Public

    A fast constructor of the compressed de Bruijn graph from many genomes

    medvedevgroup/TwoPaCo’s past year of commit activity
    C++ 40 10 12 1 Updated Feb 2, 2025
  • eskemap Public

    Sources for sketch-based all-hits read mapping paper

    medvedevgroup/eskemap’s past year of commit activity
    C 2 GPL-3.0 1 0 0 Updated Dec 2, 2024
  • pla-index Public
    medvedevgroup/pla-index’s past year of commit activity
    C++ 5 MIT 0 0 0 Updated Jun 21, 2024
  • ESSColor Public
    medvedevgroup/ESSColor’s past year of commit activity
    C++ 7 2 3 0 Updated Jun 15, 2024
  • HowDeSBT Public

    Sequence Bloom Tree, supporting determined/how split filters

    medvedevgroup/HowDeSBT’s past year of commit activity
    C++ 10 MIT 4 1 0 Updated Apr 19, 2024
  • pla-complexity-figures Public
    medvedevgroup/pla-complexity-figures’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Feb 27, 2024
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