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Merge pull request #1158 from maxplanck-ie/allelic_whatshap_dna #2209

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Merge pull request #1158 from maxplanck-ie/allelic_whatshap_dna

Merge pull request #1158 from maxplanck-ie/allelic_whatshap_dna #2209

Triggered via push March 9, 2026 12:43
@katsikorakatsikora
pushed 78750b7
develop
Status Success
Total duration 5m 42s
Artifacts –

linux.yml

on: push
Matrix: pip
CI
2m 0s
CI
docs
37s
docs
lint
27s
lint
Matrix: createEnvs
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44 warnings
CI
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
CI
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_seurat3_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_seurat3_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_FQLINT_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_FQLINT_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_pysam_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_pysam_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_RMATS_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_RMATS_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_CREATE_INDEX_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_CREATE_INDEX_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_SAMBAMBA_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_SAMBAMBA_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_loompy_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_loompy_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_PREPROCESSING_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_PREPROCESSING_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_RMD_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_RMD_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_alevinqc_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_alevinqc_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_eisaR_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_eisaR_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_CHIPSEQ_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_CHIPSEQ_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_DNA_MAPPING_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_DNA_MAPPING_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_RNASEQ_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_RNASEQ_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_ATAC_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_ATAC_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_scRNASEQ_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_scRNASEQ_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_HIC_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_HIC_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_WGBS_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_WGBS_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_SHARED_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_SHARED_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_DSS_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_DSS_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
createEnvs (CONDA_NONCODING_RNASEQ_ENV)
==> WARNING: A newer version of conda exists. <== current version: 25.11.1 latest version: 26.1.1 Please update conda by running $ conda update -n base -c defaults conda
createEnvs (CONDA_NONCODING_RNASEQ_ENV)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.