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1. paradigm paradigm Public

   pipeline for generating a comprehensive database of parasite genome-scale metabolic models, BioRxiv DOI: 10.1101/772467

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2. community_standards_supplemental community_standards_supplemental Public

   supplemental information for our community standards manuscript, DOI: 10.15252/msb.20199235

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3. iPfal17 iPfal17 Public

   Forked from gulermalaria/iPfal17

   model and analysis code for iPfal17, presented in Carey, Papin, & Guler, DOI: 10.1186/s12864-017-3905-1

   MATLAB

4. metabolomics metabolomics Public

   Forked from gulermalaria/metabolomics

   metabolomics analysis (code and data, with figures in .html) for mSphere submission by Carey and Covelli et al (2017), DOI: 10.1128/mSphere.00097-18

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5. cryptosporidium_microbiome cryptosporidium_microbiome Public

   analysis code for our manuscript on the microbiome during cryptosporidium infection, DOI: 10.1093/cid/ciab207

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6. uva-tumi/microbiome_course_2021 uva-tumi/microbiome_course_2021 Public

   course materials for April 2021

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