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24 Open 229 Closed
24 Open 229 Closed
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Issues list

segmentation fault during consensus
#266 opened Jun 20, 2024 by bernardo1963
Segmentation fault
#264 opened Jun 18, 2024 by chunlinxiao
1
Too many missing genes
#263 opened Jun 18, 2024 by hanqu24
2
Assembly more fragmented than expected
#261 opened Jun 10, 2024 by dmacguigan
3
Questions related to interpretation results phased assembly.
#245 opened Apr 5, 2024 by rfinkers
@Dmitry-Antipov
22
Better error reporting
#228 opened Feb 1, 2024 by Dmitry-Antipov
@brianwalenz
Snakemake 8 compatibility enhancement New feature or request
#224 opened Jan 13, 2024 by tbenavi1 v2.1
2
Strange GFA outputs in uncompressed gfa
#199 opened Sep 28, 2023 by skoren v2.1
Homogenize trio vs hic architecture enhancement New feature or request
#197 opened Sep 28, 2023 by skoren v2.1
Hi-C plus Trio on same run enhancement New feature or request
#193 opened Sep 15, 2023 by Dmitry-Antipov v2.1
@Dmitry-Antipov
2
Likely incorrect ONT-based resolution
#190 opened Sep 12, 2023 by skoren
Potential graphaligner/resolution instability bug Something isn't working
#176 opened Jul 24, 2023 by skoren
@maickrau
3
Improve coverage estimations for repeats
#172 opened Jul 13, 2023 by Dmitry-Antipov
Producing dual assemblies when no trio or Hi-C data is available enhancement New feature or request
#157 opened Jun 16, 2023 by smkumaill
@Dmitry-Antipov
2
Snakemake memory allocation bug Something isn't working
#125 opened Feb 13, 2023 by steven-solar
@brianwalenz
1
--paths doesn't find ONT reads unless --nano is supplied.
#121 opened Jan 12, 2023 by brianwalenz
Incorporate mer counting for haplotypes in verkko enhancement New feature or request
#120 opened Jan 9, 2023 by skoren v2.1
@brianwalenz
Miscellaneous snakemake cleanup
#115 opened Nov 25, 2022 by skoren
@brianwalenz
1
Support for PBS
#88 opened Jul 19, 2022 by ndierckx
2
Use only patch subsequence of ONT read in consensus enhancement New feature or request
#68 opened May 3, 2022 by skoren
1
Extended list of samples of interest question Further information is requested
#23 opened Dec 10, 2021 by snurk
@skoren
Consider multiplicities of original nodes in the final layout question Further information is requested
#13 opened Nov 13, 2021 by snurk
@snurk
Identify homopolymers-count variants question Further information is requested
#7 opened Nov 5, 2021 by skoren
2
Consider alternate resolution in complex tangles enhancement New feature or request
#5 opened Nov 5, 2021 by skoren
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