ci: Use uv to avoid checking in fixtures" (#220)

* Update fixture scripts with inline metadata

* Delete fixtures

* Ignore fixtures

* Setup uv

* Check back in the fixtures

README.md

@@ -103,7 +103,9 @@ classDiagram
 
 ## Development
 
-This library uses the [`pnpm`](https://pnpm.io/) package manager.
+This library uses the [`pnpm`](https://pnpm.io/) package manager and
+[`uv`](https://github.com/astral-sh/uv) for creating fixtures with Python.
+Please make sure you have both installed before running the following commands:
 
 ```bash
 pnpm install

fixtures/v2/data.zarr/.zmetadata

@@ -319,8 +319,9 @@
                 4
             ],
             "compressor": {
+                "checksum": false,
                 "id": "zstd",
-                "level": 1
+                "level": 0
             },
             "dtype": "<i2",
             "fill_value": 0,

fixtures/v2/data.zarr/1d.contiguous.zstd.i2/.zarray

@@ -3,8 +3,9 @@
         4
     ],
     "compressor": {
+        "checksum": false,
         "id": "zstd",
-        "level": 1
+        "level": 0
     },
     "dtype": "<i2",
     "fill_value": 0,

fixtures/v2/data.zarr/3d.chunked.O/.zarray

@@ -25,4 +25,4 @@
         2
     ],
     "zarr_format": 2
-}
+}

fixtures/v3/data.zarr/1d.chunked.compressed.sharded.i2/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [2]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [1], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}]}, "name": "sharding_indexed"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [2]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [1], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}], "index_location": "end"}, "name": "sharding_indexed"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.chunked.filled.compressed.sharded.i2/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [2]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [1], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}]}, "name": "sharding_indexed"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [2]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [1], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}], "index_location": "end"}, "name": "sharding_indexed"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.chunked.i2/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [2]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [2]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "zarr_format": 3, "node_type": "array", "dimension_names": null}

fixtures/v3/data.zarr/1d.chunked.ragged.i2/zarr.json

@@ -1 +1 @@
-{"shape": [5], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [2]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [5], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [2]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.b1/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "bool", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "bool", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": false, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.blosc.i2/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.compressed.sharded.b1/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "bool", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}]}, "name": "sharding_indexed"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "bool", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": false, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}], "index_location": "end"}, "name": "sharding_indexed"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.compressed.sharded.f4/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "float32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}]}, "name": "sharding_indexed"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "float32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}], "index_location": "end"}, "name": "sharding_indexed"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.compressed.sharded.f8/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "float64", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}]}, "name": "sharding_indexed"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "float64", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}], "index_location": "end"}, "name": "sharding_indexed"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.compressed.sharded.i2/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}]}, "name": "sharding_indexed"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}], "index_location": "end"}, "name": "sharding_indexed"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.compressed.sharded.i4/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "int32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}]}, "name": "sharding_indexed"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "int32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}], "index_location": "end"}, "name": "sharding_indexed"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.compressed.sharded.u1/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "uint8", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}]}, "name": "sharding_indexed"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "uint8", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"chunk_shape": [4], "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "index_codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"name": "crc32c"}], "index_location": "end"}, "name": "sharding_indexed"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.f4.be/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "float32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "big"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "float32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "big"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.f4.le/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "float32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "float32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.f8/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "float64", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "float64", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.gzip.i2/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "int16", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"level": 5}, "name": "gzip"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}

fixtures/v3/data.zarr/1d.contiguous.i4/zarr.json

@@ -1 +1 @@
-{"shape": [4], "data_type": "int32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "dimension_names": null, "zarr_format": 3, "node_type": "array"}
+{"shape": [4], "data_type": "int32", "chunk_grid": {"configuration": {"chunk_shape": [4]}, "name": "regular"}, "chunk_key_encoding": {"configuration": {"separator": "/"}, "name": "default"}, "fill_value": 0, "codecs": [{"configuration": {"endian": "little"}, "name": "bytes"}, {"configuration": {"typesize": 4, "cname": "zstd", "clevel": 5, "shuffle": "noshuffle", "blocksize": 0}, "name": "blosc"}], "attributes": {}, "zarr_format": 3, "node_type": "array"}