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Add rsync and google-crc32c #168

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merged 4 commits into from
Mar 20, 2025
Merged

Add rsync and google-crc32c #168

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be3bfeb
Remove (re)installation of conda-libmamba-solver
leehart Jan 17, 2025
9cc00b7
Add rsync and google-crc32c requirements
leehart Jan 17, 2025
f3be732
Remove pinned env files
leehart Jan 17, 2025
e884310
Add pinned env files, sourced from CI
leehart Jan 17, 2025
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108 changes: 57 additions & 51 deletions environment-pinned-macos-latest.yml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: mgenv-c3cac43
name: mgenv-c74a1ff
channels:
- conda-forge
- bioconda
Expand All @@ -25,7 +25,6 @@ dependencies:
- argon2-cffi-bindings=21.2.0=py312h024a12e_5
- argparse-dataclass=2.0.0=pyhd8ed1ab_0
- arrow=1.3.0=pyhd8ed1ab_1
- asciitree=0.3.3=py_2
- asteval=1.0.5=pyhd8ed1ab_0
- asttokens=3.0.0=pyhd8ed1ab_1
- atk-1.0=2.38.0=hd03087b_2
Expand Down Expand Up @@ -57,7 +56,7 @@ dependencies:
- bcftools=1.21=h48e1df0_1
- bcrypt=4.2.1=py312hcd83bfe_0
- beautifulsoup4=4.12.3=pyha770c72_1
- biopython=1.84=py312h7e5086c_0
- biopython=1.85=py312hea69d52_0
- black=24.10.0=py312h81bd7bf_0
- blas=2.126=openblas
- blas-devel=3.9.0=26_osxarm64_openblas
Expand Down Expand Up @@ -90,18 +89,18 @@ dependencies:
- cftime=1.6.4=py312h755e627_1
- charls=2.4.2=h13dd4ca_0
- charset-normalizer=3.4.1=pyhd8ed1ab_0
- clang=19.1.6=default_h474c9e2_0
- clang-19=19.1.6=default_hf90f093_0
- clang_impl_osx-64=19.1.6=h3ef2313_23
- clang_osx-64=19.1.6=ha3ec999_23
- clangxx=19.1.6=default_h1ffe849_0
- clangxx_impl_osx-64=19.1.6=h895606f_23
- clangxx_osx-64=19.1.6=ha3ec999_23
- clang=19.1.7=default_h474c9e2_0
- clang-19=19.1.7=default_hf90f093_0
- clang_impl_osx-64=19.1.7=h313442c_23
- clang_osx-64=19.1.7=ha3ec999_23
- clangxx=19.1.7=default_h1ffe849_0
- clangxx_impl_osx-64=19.1.7=h92d4587_23
- clangxx_osx-64=19.1.7=ha3ec999_23
- click=8.1.8=pyh707e725_0
- click-plugins=1.1.1=pyhd8ed1ab_1
- cligj=0.7.2=pyhd8ed1ab_2
- cloudpickle=3.1.0=pyhd8ed1ab_2
- coiled=1.71.1=pyhd8ed1ab_0
- cloudpickle=3.1.1=pyhd8ed1ab_0
- coiled=1.71.2=pyhd8ed1ab_0
- coin-or-cbc=2.10.12=h7cfbe6c_1
- coin-or-cgl=0.60.9=hbf821b3_0
- coin-or-clp=1.17.10=hde4c74c_0
Expand All @@ -112,15 +111,16 @@ dependencies:
- colorcet=3.1.0=pyhd8ed1ab_1
- coloredlogs=15.0.1=pyhd8ed1ab_4
- comm=0.2.2=pyhd8ed1ab_1
- compiler-rt=19.1.6=hd2aecb6_0
- compiler-rt_osx-arm64=19.1.6=h7969c41_0
- compiler-rt=19.1.7=hd2aecb6_0
- compiler-rt_osx-arm64=19.1.7=h7969c41_0
- conda-inject=1.3.2=pyhd8ed1ab_0
- configargparse=1.7=pyhd8ed1ab_1
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.3.1=py312hb23fbb9_0
- coverage=7.6.10=py312h998013c_0
- cpython=3.12.8=py312hd8ed1ab_1
- cramjam=2.8.4rc3=py312h51b60f1_2
- crc32c=2.7.1=py312hea69d52_0
- cryptography=44.0.0=py312hf9bd80e_0
- cycler=0.12.1=pyhd8ed1ab_1
- cython=3.0.11=py312hde4cb15_2
Expand All @@ -143,6 +143,7 @@ dependencies:
- dill=0.3.9=pyhd8ed1ab_1
- distributed=2024.12.1=pyhd8ed1ab_0
- docutils=0.20.1=py312h81bd7bf_3
- donfig=0.8.1.post1=pyhd8ed1ab_1
- dpath=2.2.0=pyha770c72_0
- eido=0.2.4=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_1
Expand All @@ -151,7 +152,6 @@ dependencies:
- executing=2.1.0=pyhd8ed1ab_1
- fabric=3.2.2=pyhd8ed1ab_1
- fastcluster=1.2.6=py312h02baea5_4
- fasteners=0.19=pyhd8ed1ab_1
- fastparquet=2024.11.0=py312he0011b7_0
- filelock=3.16.1=pyhd8ed1ab_1
- flake8=7.1.1=pyhd8ed1ab_1
Expand Down Expand Up @@ -199,7 +199,7 @@ dependencies:
- google-auth=2.37.0=pyhd8ed1ab_0
- google-auth-oauthlib=1.2.1=pyhd8ed1ab_1
- google-cloud-core=2.4.1=pyhd8ed1ab_1
- google-cloud-sdk=505.0.0=py312h81bd7bf_0
- google-cloud-sdk=506.0.0=py312h81bd7bf_0
- google-cloud-storage=2.19.0=pyhd8ed1ab_0
- google-crc32c=1.1.2=py312h1fa1217_6
- google-resumable-media=2.7.2=pyhd8ed1ab_2
Expand Down Expand Up @@ -237,7 +237,7 @@ dependencies:
- importlib_resources=6.5.2=pyhd8ed1ab_0
- importnb=2023.11.1=pyhd8ed1ab_1
- iniconfig=2.0.0=pyhd8ed1ab_1
- intake=2.0.7=pyhd8ed1ab_1
- intake=2.0.8=pyhd8ed1ab_0
- intake-xarray=2.0.0=pyhd8ed1ab_1
- intervaltree=3.1.0=pyhd8ed1ab_1
- invoke=2.2.0=pyhd8ed1ab_1
Expand Down Expand Up @@ -289,7 +289,7 @@ dependencies:
- jupyterlab_widgets=3.0.13=pyhd8ed1ab_1
- jupytext=1.16.6=pyh80e38bb_0
- jxrlib=1.1=h93a5062_3
- kiwisolver=1.4.7=py312h6142ec9_0
- kiwisolver=1.4.8=py312h2c4a281_0
- krb5=1.21.3=h237132a_0
- latexcodec=2.0.1=pyh9f0ad1d_0
- lazy-loader=0.4=pyhd8ed1ab_2
Expand All @@ -301,10 +301,10 @@ dependencies:
- libabseil=20240722.0=cxx17_h07bc746_4
- libaec=1.1.3=hebf3989_0
- libarchive=3.7.7=h3b16cec_3
- libarrow=18.1.0=hf3eb8e5_8_cpu
- libarrow-acero=18.1.0=hf07054f_8_cpu
- libarrow-dataset=18.1.0=hf07054f_8_cpu
- libarrow-substrait=18.1.0=h4239455_8_cpu
- libarrow=19.0.0=hf3eb8e5_0_cpu
- libarrow-acero=19.0.0=hf07054f_0_cpu
- libarrow-dataset=19.0.0=hf07054f_0_cpu
- libarrow-substrait=19.0.0=h4239455_0_cpu
- libasprintf=0.22.5=h8414b35_3
- libasprintf-devel=0.22.5=h8414b35_3
- libavif16=1.1.1=h45b7238_2
Expand All @@ -313,11 +313,11 @@ dependencies:
- libbrotlidec=1.1.0=hd74edd7_2
- libbrotlienc=1.1.0=hd74edd7_2
- libcblas=3.9.0=26_osxarm64_openblas
- libclang-cpp19.1=19.1.6=default_hf90f093_0
- libclang-cpp19.1=19.1.7=default_hf90f093_0
- libcrc32c=1.1.2=hbdafb3b_0
- libcurl=8.11.1=h73640d1_0
- libcxx=19.1.6=ha82da77_1
- libcxx-devel=19.1.6=h6dc3340_1
- libcxx=19.1.7=ha82da77_0
- libcxx-devel=19.1.7=h6dc3340_0
- libde265=1.0.15=h2ffa867_0
- libdeflate=1.22=hd74edd7_0
- libedit=3.1.20240808=pl5321hafb1f1b_0
Expand All @@ -338,7 +338,7 @@ dependencies:
- libgfortran-devel_osx-arm64=13.2.0=h5d7a38c_3
- libgfortran5=13.2.0=hf226fd6_3
- libgirepository=1.82.0=h607895c_0
- libglib=2.82.2=h07bd6cf_0
- libglib=2.82.2=hdff4504_1
- libgoogle-cloud=2.33.0=hdbe95d5_1
- libgoogle-cloud-storage=2.33.0=h7081f7f_1
- libgpg-error=1.51=h579ddeb_1
Expand All @@ -355,13 +355,13 @@ dependencies:
- liblapack=3.9.0=26_osxarm64_openblas
- liblapacke=3.9.0=26_osxarm64_openblas
- libllvm14=14.0.6=hd1a9a77_4
- libllvm19=19.1.6=hc4b4ae8_0
- libllvm19=19.1.7=hc4b4ae8_0
- liblzma=5.6.3=h39f12f2_1
- libmagic=5.46=h93a6450_0
- libnetcdf=4.9.2=nompi_h6569565_116
- libnghttp2=1.64.0=h6d7220d_0
- libopenblas=0.3.28=openmp_hf332438_1
- libparquet=18.1.0=h636d7b7_8_cpu
- libparquet=19.0.0=h636d7b7_0_cpu
- libpng=1.6.45=h3783ad8_0
- libprotobuf=5.28.3=h3bd63a1_1
- libre2-11=2024.07.02=h07bc746_2
Expand All @@ -371,23 +371,23 @@ dependencies:
- libsodium=1.0.20=h99b78c6_0
- libspatialindex=2.1.0=h57eeb1c_0
- libspatialite=5.1.0=hf92fc0a_12
- libsqlite=3.47.2=h3f77e49_0
- libsqlite=3.48.0=h3f77e49_0
- libssh2=1.11.1=h9cc3647_0
- libthrift=0.21.0=h64651cc_0
- libtiff=4.7.0=ha962b0a_2
- libtorch=2.5.1=cpu_generic_h5de138e_8
- libtorch=2.5.1=cpu_generic_hfeb0365_9
- libutf8proc=2.9.0=h5505292_1
- libuv=1.49.2=h7ab814d_0
- libuv=1.50.0=h5505292_0
- libwebp-base=1.5.0=h2471fea_0
- libxcb=1.17.0=hdb1d25a_0
- libxml2=2.13.5=h178c5d8_1
- libzip=1.11.2=h1336266_0
- libzlib=1.3.1=h8359307_2
- libzopfli=1.0.3=h9f76cd9_0
- linkify-it-py=2.0.3=pyhd8ed1ab_1
- llvm-openmp=19.1.6=hdb05f8b_0
- llvm-tools=19.1.6=hd2aecb6_0
- llvm-tools-19=19.1.6=h87a4c7e_0
- llvm-openmp=19.1.7=hdb05f8b_0
- llvm-tools=19.1.7=hd2aecb6_0
- llvm-tools-19=19.1.7=h87a4c7e_0
- llvmlite=0.43.0=py312ha9ca408_1
- lmfit=1.3.2=pyhd8ed1ab_1
- locket=1.0.0=pyhd8ed1ab_0
Expand Down Expand Up @@ -424,8 +424,8 @@ dependencies:
- mysqlclient=2.2.4=py312h20a0b95_1
- myst-nb=1.1.2=pyhd8ed1ab_1
- myst-parser=2.0.0=pyhd8ed1ab_0
- narwhals=1.21.1=pyhd8ed1ab_0
- nbclassic=1.1.0=pyhd8ed1ab_1
- narwhals=1.22.0=pyhd8ed1ab_0
- nbclassic=1.2.0=pyhd8ed1ab_0
- nbclient=0.10.2=pyhd8ed1ab_0
- nbconvert=7.16.5=hd8ed1ab_1
- nbconvert-core=7.16.5=pyhd8ed1ab_1
Expand All @@ -443,7 +443,6 @@ dependencies:
- notebook=6.5.7=pyha770c72_0
- notebook-shim=0.2.4=pyhd8ed1ab_1
- numba=0.60.0=py312h41cea2d_0
- numcodecs=0.14.1=py312hcb1e3ce_0
- numexpr=2.10.2=py312hbbbb429_0
- numpy=1.26.4=py312h8442bc7_0
- oauthlib=3.2.2=pyhd8ed1ab_1
Expand Down Expand Up @@ -483,6 +482,7 @@ dependencies:
- plotly=5.24.1=pyhd8ed1ab_1
- pluggy=1.5.0=pyhd8ed1ab_1
- pomegranate=1.0.0=pyhd8ed1ab_3
- popt=1.16=h61edf1b_2002
- portalocker=2.10.1=py312h81bd7bf_1
- proj=9.5.1=h1318a7e_0
- prometheus_client=0.21.1=pyhd8ed1ab_0
Expand All @@ -498,8 +498,8 @@ dependencies:
- pure_eval=0.2.3=pyhd8ed1ab_1
- py-cpuinfo=9.0.0=pyhd8ed1ab_1
- py2vega=0.6.1=pyhd8ed1ab_0
- pyarrow=18.1.0=py312h1f38498_0
- pyarrow-core=18.1.0=py312hc40f475_0_cpu
- pyarrow=19.0.0=py312h1f38498_0
- pyarrow-core=19.0.0=py312hc40f475_0_cpu
- pyasn1=0.6.1=pyhd8ed1ab_2
- pyasn1-modules=0.4.1=pyhd8ed1ab_1
- pybtex=0.24.0=pyhd8ed1ab_3
Expand All @@ -519,8 +519,8 @@ dependencies:
- pyjwt=2.10.1=pyhd8ed1ab_0
- pynacl=1.5.0=py312h024a12e_4
- pynndescent=0.5.13=pyhd8ed1ab_1
- pyobjc-core=10.3.2=py312hb9d441b_0
- pyobjc-framework-cocoa=10.3.2=py312hb9d441b_0
- pyobjc-core=11.0=py312hb9d441b_0
- pyobjc-framework-cocoa=11.0=py312hb9d441b_0
- pyogrio=0.10.0=py312hfd5e53c_1
- pyopenssl=24.3.0=pyhd8ed1ab_0
- pyparsing=3.2.1=pyhd8ed1ab_0
Expand All @@ -539,7 +539,7 @@ dependencies:
- python-magic=0.4.27=pyh9ac5cc3_5
- python-tzdata=2024.2=pyhd8ed1ab_1
- python_abi=3.12=5_cp312
- pytorch=2.5.1=cpu_generic_py312_h6e42039_8
- pytorch=2.5.1=cpu_generic_py312_h6e42039_9
- pytz=2024.1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_1
- pyviz_comms=2.3.2=pyhd8ed1ab_0
Expand All @@ -551,7 +551,7 @@ dependencies:
- rav1e=0.6.6=h69fbcac_2
- re2=2024.07.02=h6589ca4_2
- readline=8.2=h92ec313_1
- referencing=0.35.1=pyhd8ed1ab_1
- referencing=0.36.1=pyhd8ed1ab_0
- requests=2.32.3=pyhd8ed1ab_1
- requests-oauthlib=2.0.0=pyhd8ed1ab_1
- reretry=0.11.8=pyhd8ed1ab_1
Expand All @@ -562,6 +562,7 @@ dependencies:
- rioxarray=0.17.0=pyhd8ed1ab_0
- rpds-py=0.22.3=py312hcd83bfe_0
- rsa=4.9=pyhd8ed1ab_1
- rsync=3.4.0=hdc80576_0
- rtree=1.3.0=py312hda3fc1a_3
- ruamel.yaml=0.18.10=py312hea69d52_0
- ruamel.yaml.clib=0.2.8=py312h0bf5046_1
Expand Down Expand Up @@ -598,7 +599,7 @@ dependencies:
- snuggs=1.4.7=pyhd8ed1ab_2
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- soupsieve=2.5=pyhd8ed1ab_1
- sparse=0.15.4=pyh267e887_1
- sparse=0.15.5=pyh72ffeb9_0
- spectate=1.0.1=pyhd8ed1ab_0
- sphinx=7.4.7=pyhd8ed1ab_0
- sphinx-autobuild=2024.10.3=pyhd8ed1ab_1
Expand All @@ -619,7 +620,7 @@ dependencies:
- sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_1
- sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_1
- sqlalchemy=2.0.37=py312hea69d52_0
- sqlite=3.47.2=hd7222ec_0
- sqlite=3.48.0=hd7222ec_0
- stack_data=0.6.3=pyhd8ed1ab_1
- starlette=0.45.2=pyha770c72_0
- statsmodels=0.14.4=py312h755e627_0
Expand Down Expand Up @@ -653,7 +654,7 @@ dependencies:
- typing-extensions=4.12.2=hd8ed1ab_1
- typing_extensions=4.12.2=pyha770c72_1
- typing_utils=0.1.0=pyhd8ed1ab_1
- tzdata=2024b=hc8b5060_0
- tzdata=2025a=h78e105d_0
- tzlocal=5.2=py312h81bd7bf_1
- ubiquerg=0.8.0=pyhd8ed1ab_0
- uc-micro-py=1.0.3=pyhd8ed1ab_1
Expand All @@ -676,19 +677,19 @@ dependencies:
- websockets=14.1=py312hea69d52_0
- wheel=0.45.1=pyhd8ed1ab_1
- widgetsnbextension=3.5.1=pyh9f0ad1d_3
- wrapt=1.17.1=py312hea69d52_0
- wrapt=1.17.2=py312hea69d52_0
- x265=3.5=hbc6ce65_3
- xarray=2024.7.0=pyhd8ed1ab_0
- xarray=2025.1.1=pyhd8ed1ab_0
- xerces-c=3.2.5=h92fc2f4_2
- xlrd=2.0.1=pyhd8ed1ab_3
- xlwt=1.3.0=py_1
- xorg-libxau=1.0.12=h5505292_0
- xorg-libxdmcp=1.1.5=hd74edd7_0
- xxhash=0.8.3=h5505292_0
- xyzservices=2024.9.0=pyhd8ed1ab_1
- yaml=0.2.5=h3422bc3_2
- yarl=1.18.3=py312hea69d52_0
- yte=1.5.5=pyha770c72_0
- zarr=2.15.0=pyhd8ed1ab_1
- zeromq=4.3.5=hc1bb282_7
- zfp=1.0.1=h1c5d8ea_2
- zict=3.0.0=pyhd8ed1ab_1
Expand All @@ -699,16 +700,20 @@ dependencies:
- zstd=1.5.6=hb46c0d2_0
- pip:
- anjl==1.4.0
- asciitree==0.3.3
- bed-reader==1.0.6
- dash-core-components==2.0.0
- dash-cytoscape==1.0.2
- dash-html-components==2.0.0
- dash-table==5.0.0
- fasteners==0.19
- flask==3.0.3
- igv-notebook==0.6.1
- ipinfo==5.1.1
- lxml==5.3.0
- lxml-html-clean==0.4.1
- malariagen-data==14.0.0
- malariagen-data==15.0.0
- numcodecs==0.15.0
- numpydoc-decorator==2.2.1
- orjson==3.10.14
- petlx==1.0.3
Expand All @@ -725,4 +730,5 @@ dependencies:
- typeguard==4.4.1
- werkzeug==3.0.6
- yaspin==3.1.0
prefix: /Users/runner/work/mgenv/mgenv/deps/conda/envs/mgenv-c3cac43
- zarr==2.18.4
prefix: /Users/runner/work/mgenv/mgenv/deps/conda/envs/mgenv-c74a1ff
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