This is the project repository for "A deep learning classifier for local ancestry inference". Here, you will find descriptions of our reference panel, baseline model (RFMix), and deep learning classifier (SegNet) -- respectively, in the data, baseline, and model subdirectories.
Additional information on evaluation, including results from a hyperparameter optimization and full test set benchmark, can be found in the results foder. Questions about this project can be addressed here on the repository, or sent to Matthew Aguirre (magu) and Alexander Ioannidis (ioannid) -- respective addresses (at stanford dot edu).