It's mostly an interface for OpenCV special make for counting cells on a picture.
To install this from the internet use pip or follow the install instructions:
$ python3 -m pip install git+git://github.com/linuxluigi/PyCellFinder.gitUse it with the default parameters:
$ pycellfinder -i path_to_your_imageThe output presents the count of found objects in the image.
| usage | default value | description |
|---|---|---|
-h, --help --version, -v --input INPUT, -i INPUT --output OUTPUT, -o OUTPUT --plot PLOT, -p PLOT |
show a help message and exit show program's version number and exit path to input file path to output file set True for plot output image |
|
--threshold THRESHOLD, -t THRESHOLD --min_size MIN --max_size MAX --color COLOR --circularity CIRCULARITY --convexity CONVEXITY --inertia INERTIA |
16 |
threshold level min object size max object size filter by color 0=Black 255=White filter by circularity, float value between 0.0 & 1.0 filter by convexity, float value between 0.0 & 1.0 filter by inertia |