Skip to content
@klamt-lab

Steffen Klamt's Lab at the Max Planck Institute Magdeburg

Software developed by members of the ARB group of Steffen Klamt at the Max Planck Institute Magdeburg

Pinned Loading

  1. straindesign straindesign Public

    StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

    Python 39 7

  2. autopacmen autopacmen Public

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

    HTML 13 7

  3. Kinetic-models-of-E.-coli Kinetic-models-of-E.-coli Public

    Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.

    3

  4. CommModelPy CommModelPy Public

    Create stoichiometric metabolic network models of single-species or multi-species communities

    Python 3

  5. MEMO MEMO Public

    Models and scripts for the MEMO paper

    MATLAB 1

  6. astheriscPackage astheriscPackage Public

    Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

    MATLAB

Repositories

Showing 10 of 17 repositories
  • straindesign Public

    StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

    klamt-lab/straindesign’s past year of commit activity
    Python 39 Apache-2.0 7 10 0 Updated Sep 27, 2024
  • GDP-Fucose_OptMet2023_Paper Public

    Contains all relevant data of the 2023 GDP-Fucose paper.

    klamt-lab/GDP-Fucose_OptMet2023_Paper’s past year of commit activity
    Component Pascal 3 Apache-2.0 0 0 0 Updated Jun 28, 2024
  • OptMSP Public
    klamt-lab/OptMSP’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Jan 17, 2024
  • autopacmen Public

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

    klamt-lab/autopacmen’s past year of commit activity
    HTML 13 Apache-2.0 7 7 0 Updated Jul 11, 2023
  • TCOSA Public

    Thermodynamic Cofactor Swapping Analysis

    klamt-lab/TCOSA’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jul 7, 2023
  • CNApy Public

    The Klamt lab is the main developer of CNApy, an integrated environment for metabolic network analysis which you can find here: https://github.com/cnapy-org/CNApy

    klamt-lab/CNApy’s past year of commit activity
    1 Apache-2.0 0 0 0 Updated Jul 15, 2022
  • astheriscPackage Public

    Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

    klamt-lab/astheriscPackage’s past year of commit activity
    MATLAB 0 Apache-2.0 0 0 0 Updated Jun 1, 2022
  • CNAhelpers Public

    A bunch of functions that come in handy when working with CNA

    klamt-lab/CNAhelpers’s past year of commit activity
    MATLAB 1 Apache-2.0 1 0 0 Updated Dec 3, 2021
  • Models_E.coli_High_ATP_Demand Public

    Kinetic and stoichiometric model for the simulation of enforced ATPwasting in E.coli

    klamt-lab/Models_E.coli_High_ATP_Demand’s past year of commit activity
    Component Pascal 3 Apache-2.0 0 0 0 Updated Nov 23, 2021
  • Kinetic-models-of-E.-coli Public

    Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.

    klamt-lab/Kinetic-models-of-E.-coli’s past year of commit activity
    3 0 0 0 Updated Oct 8, 2021

Top languages

Loading…

Most used topics

Loading…