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Genetic Association Plots

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kenhanscombe/associatr

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associatr: Genetic Association Plots

Lifecycle: experimental Travis build status Codecov test coverage

Overview

associatr is an R package for manhattan and regional plots. By default only variants with p < 0.001 are plotted in the manhattan plot. Region plots use LDlinkR to retrieve LD and SQL queries to UCSC genome browser to get biological context.

Installation

devtools::install_github("kenhanscombe/associatr", dependencies = TRUE, force = TRUE)

Note. region requires an LDlinkR personal access token. Request token.

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Genetic Association Plots

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