Skip to content

Commit

Permalink
Adding SSDBM proceedings paper. Corrercting publication years of PopS…
Browse files Browse the repository at this point in the history
…TR and NetCoffee.
  • Loading branch information
bkehr committed Jun 25, 2024
1 parent 06ac0eb commit 040ac45
Showing 1 changed file with 9 additions and 7 deletions.
16 changes: 9 additions & 7 deletions publications.html
Original file line number Diff line number Diff line change
Expand Up @@ -47,6 +47,10 @@ <h2 id="2024">2024</h2>
<strong>Mirus T</strong>, <strong>Lohmayer R</strong>, <strong>Döhring C</strong>, Halldórsson BV, <strong>Kehr B</strong>.<br />
<a href="https://www.biorxiv.org/content/10.1101/2024.03.15.585230v1">Preprint on bioRxiv</a>, accepted for ECCB 2024 proceedings (Bioinformatics).</p>

<p><strong>How do users design scientific workflows? The Case of Snakemake and Nextflow.</strong>
Pohl S, Elfaramawy N, Miling A, <strong>Cao K</strong>, <strong>Kehr B</strong>, Weidlich M.
Accepted for presentation at <a href="https://ssdbm.org/2024/">SSDBM 2024</a>.</p>

<h2 id="2023">2023</h2>

<p><strong>From Program Chains to Exploratory Workflows: PopinSnake for Genomic Insertion Detection.</strong><br />
Expand Down Expand Up @@ -139,6 +143,10 @@ <h2 id="2017">2017</h2>
Jonsson H, Sulem P, <strong>Kehr B</strong>, Kristmundsdottir S, Zink F, Hjartarson E, Hardarson MT, Hjorleifsson KE, Eggertsson HP, Gudjonsson SAA, Ward LD, Arnadottir GA, Helgason EA, Helgason H, Gylfason A, Jonasdottir As, Jonasdottir Ad, Rafnar Th, Besenbacher S, Frigge M, Stacey SN, Magnusson OTh, Thorsteinsdottir U, Masson G, Kong A, Halldorsson BV, Helgason A, Gudbjartsson DF, Stefansson K.<br />
<a href="https://www.nature.com/articles/sdata2017115">Scientific Data 2017, 4:170115</a>.</p>

<p><strong>popSTR: population-scale detection of STR variants.</strong><br />
Kristmundsdottir S, Sigurpalsdottir BD, <strong>Kehr B</strong>, Halldorsson BV.<br />
<a href="https://academic.oup.com/bioinformatics/article-abstract/33/24/4041/2525679">Bioinformatics 2017, 33(24):4041-4048</a>.</p>

<p><strong>A rare splice donor mutation in the haptoglobin gene associates with blood lipid levels and coronary artery disease.</strong><br />
Bjornsson E, Helgason H, Halldorsson G, Helgadottir A, Gylfason A, <strong>Kehr B</strong>, Jonasdottir Ad, Jonasdottir As, Sigurdsson A, Oddsson A, Thorleifsson G, Magnusson OTh, Gretarsdottir S, Zink F, Kristjansson RP, Asgeirsdottir M, Swinkels DW, Kiemeney LA, Eyjolfsson GI, Sigurdardottir O, Masson G, Olafsson I, Thorgeirsson G, Holm H, Thorsteinsdottir U, Gudbjartsson DF, Sulem P, Stefansson K.<br />
<a href="https://academic.oup.com/hmg/article-lookup/doi/10.1093/hmg/ddx123">Human Molecular Genetics 2017, 26(12):2364-2376</a>.</p>
Expand All @@ -161,10 +169,6 @@ <h2 id="2016">2016</h2>
Halldorsson BV, Hardarson MT, <strong>Kehr B</strong>, Styrkarsdottir U, Gylfason A, Thorleifsson G, Zink F, Jonasdottir A, Jonasdottir A, Sulem P, Masson G, Thorsteinsdottir U, Helgason A, Kong A, Gudbjartsson DF, Stefansson K.<br />
<a href="http://www.nature.com/ng/journal/v48/n11/full/ng.3669.html">Nature Genetics 2016, 48:1377-1384</a>.</p>

<p><strong>popSTR: population-scale detection of STR variants.</strong><br />
Kristmundsdottir S, Sigurpalsdottir BD, <strong>Kehr B</strong>, Halldorsson BV.<br />
<a href="https://academic.oup.com/bioinformatics/article-abstract/33/24/4041/2525679">Bioinformatics 2016, 33(24):4041-4048</a>.</p>

<p><strong>chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohorts.</strong><br />
<strong>Kehr B</strong>, Melsted P.<br />
<a href="http://bioinformatics.oxfordjournals.org/content/32/14/2202">Bioinformatics 2016, 32(14):2202-2204</a>.</p>
Expand Down Expand Up @@ -193,11 +197,9 @@ <h2 id="2014">2014</h2>
<strong>Kehr B</strong>.<br />
<a href="http://www.diss.fu-berlin.de/diss/receive/FUDISS_thesis_000000096799?lang=de">PhD Thesis, Freie Universität Berlin</a>.</p>

<h2 id="2013">2013</h2>

<p><strong>NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks.</strong><br />
Hu J, <strong>Kehr B</strong>, Reinert K.<br />
<a href="http://bioinformatics.oxfordjournals.org/content/30/4/540">Bioinformatics 2013, 30(4):540-548</a>.</p>
<a href="http://bioinformatics.oxfordjournals.org/content/30/4/540">Bioinformatics 2014, 30(4):540-548</a>.</p>

<h2 id="2012">2012</h2>

Expand Down

0 comments on commit 040ac45

Please sign in to comment.