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Update requirements.txt
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juanjo255 authored Jan 21, 2025
1 parent 5070a0a commit 181646b
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,10 @@ echo 'export PATH="/opt/homebrew/opt/gnu-getopt/bin:$PATH"' >> ~/.zshrc

CONDA/PIP requirements for linux and osx-64
install -c conda-forge -c bioconda minimap2 openjdk=17 bcftools seqkit liftoff=1.6.3 samtools flye
cargo install cramino requests vcfstats
# for mac
# brew install cmake
cargo install cramino
pip install requests vcfstats


PRE-BUILT requirements
Expand All @@ -19,4 +22,4 @@ wget https://github.com/broadinstitute/gatk/releases/download/4.6.0.0/gatk-4.6.0
unzip gatk-4.6.0.0.zip
wget https://github.com/genepi/haplogrep3/releases/download/v3.2.1/haplogrep3-3.2.1-linux.zip
unzip haplogrep3-3.2.1-linux.zip
chmod +x haplogrep3*
chmod +x haplogrep3*

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