kliqfindr - KliqueFinder Algorithm in R

WARNING

This is pre-release software under development and is not intended for general use at this time.

Installation

This package is not on CRAN and does not yet have pre-compiled binaries. Installation therefore involves compiling Fortran code from source and requires command line tools outside of R. You will need R 3.3.x or later.

1. Install the command line tools for your operating system.
   1. Windows
      1. Install the Windows command line tools. Use the Rtools35.exe installer from Rtools downloads.
   2. Mac OS X
      1. Install Xcode Command Line Tools. Use the following install command in the terminal

         $ xcode-select --install
         

         Only the Command Line Tools (220MB) are needed. A full install of Xcode (7.1GB) is not necessary.
      2. Install GNU Fortran for MacOS X from https://github.com/fxcoudert/gfortran-for-macOS/releases.
   3. Debian-based Linux
      1. Install the r-base-dev package. Use the following install command in the terminal

         $ sudo apt-get install r-base-dev
         

2. Install the devtools package. In R

   > install.packages('devtools')
   

3. Install the current development version of kliqfindr from GitHub with devtools. In R

   > devtools::install_github("jtbates/kliqfindr")
   

Troubleshooting

More information on troubleshooting installation issues is available on the wiki.