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1. mskcc/neoantigen-pipeline mskcc/neoantigen-pipeline Public

   Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

   Python 1

2. mskcc/tempo mskcc/tempo Public

   CCS research pipeline to process WES and WGS TN pairs

   Groovy 12 5

3. mskcc-omics-workflows/modules mskcc-omics-workflows/modules Public

   A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

   Python 5 3

4. SARSNTDB SARSNTDB Public

   This is the source code for the WIP SARSNTDB. This is a database for users of varying levels of knowledge about SARS-CoV-2 virology or genomics. It provides a quick and easy nucleotide-based search…

   PHP

5. Genomeinformatics Genomeinformatics Public

   Jupyter Notebook