plasmid_cluster_ML.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "b270a12d",
   "metadata": {},
   "outputs": [],
   "source": [
    "from sklearn.feature_selection import SelectKBest, chi2, mutual_info_classif\n",
    "\n",
    "from sklearn.ensemble import RandomForestClassifier, GradientBoostingClassifier\n",
    "from sklearn.linear_model import LogisticRegression\n",
    "from sklearn.model_selection import GridSearchCV\n",
    "from sklearn.model_selection import StratifiedKFold\n",
    "from sklearn import metrics\n",
    "from sklearn.metrics import classification_report\n",
    "\n",
    "import numpy as np\n",
    "import pandas as pd\n",
    "\n",
    "import itertools as it"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "e317d7d0",
   "metadata": {},
   "outputs": [],
   "source": [
    "# code taken from 11July2022-ASMabstract_Oct2022ASMPoster.ipynb in Manuscript1_Oct2023 folder"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "29fe4ac3",
   "metadata": {},
   "source": [
    "#### Data Encoding for Plasmid Clusters from MOB-suite"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "id": "3e00dde5",
   "metadata": {
    "code_folding": [
     0
    ]
   },
   "outputs": [],
   "source": [
    "meta = pd.read_csv('/home/jee/enterococcus_sample_reconciliation/all_combined_enterococcus_metadata.tsv',\n",
    "                  sep='\\t').rename({'Quinolone':'Quin'},axis=1)[['Run_accession', 'Species',\n",
    "                  'Ampicillin', 'Vancomycin', 'Teicoplanin', 'Doxycycline',\n",
    "                  'Erythromycin', 'Nitrofurantoin', 'Gentamicin', 'Linezolid',\n",
    "                  'Levofloxacin', 'Quin', 'Streptomycin',\n",
    "                  'Tigecycline']]\n",
    "\n",
    "mob = pd.read_csv('/home/jee/final_genome_ls_enterococci_feb2022/mob_all.csv')\\\n",
    "                    [['sample_id', 'primary_cluster_id', 'secondary_cluster_id']].\\\n",
    "                    rename(columns={\"sample_id\":\"Run_accession\"})\n",
    "\n",
    "mob_all = pd.read_csv('/home/jee/final_genome_ls_enterococci_feb2022/mob_all.csv').rename(columns={\"sample_id\":\"Run_accession\"})\n",
    "# mob_primary = mob[['Run_accession','primary_cluster_id']]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "a14358f6",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "109 ['-' 'AC727' 'AB530' 'AE312' 'AC733' 'AH273' 'AB759' 'AB614' 'AE672'\n",
      " 'AE577' 'AE315' 'AD058' 'AA894' 'AB173' 'AC537' 'AE807' 'AD059' 'AD268'\n",
      " 'AB756' 'AE309' 'AE314' 'AB528' 'AB172' 'AD907' 'AD909' 'AC731' 'AB171'\n",
      " 'AA893' 'AF632' 'AB976' 'AG970' 'AD288' 'AG184' 'AD569' 'AB527' 'AB616'\n",
      " 'AD908' 'AC536' 'AE310' 'AC751' 'AC670' 'AC732' 'AB529' 'AA769' 'AH188'\n",
      " 'AC833' 'AB117' 'AB918' 'AD055' 'AA890' 'AB915' 'AD582' 'AE311' 'AC728'\n",
      " 'AD265' 'AD910' 'AB760' 'AB615' 'AC754' 'AD100' 'AA366' 'AC345' 'AF663'\n",
      " 'AC534' 'AB174' 'AC729' 'novel_9198ae084b830436dc78b2c36a55d225' 'AF662'\n",
      " 'AE313' 'AC726' 'AC607' 'AF717' 'AB369' 'AC630' 'AB977' 'AD710' 'AF568'\n",
      " 'AB917' 'AE633' 'AA892' 'AC535' 'AB758' 'AA896' 'AG002' 'AB020' 'AD269'\n",
      " 'AF761' 'AC544' 'AB973' 'AB642' 'AA891' 'AA215' 'AD906' 'AG003' 'AC631'\n",
      " 'AD297' 'AD415' 'AC468' 'AB922' 'AB920' 'AB617' 'AD414' 'AD709'\n",
      " 'novel_1a033aeec961423a98d1e337f28b31b5'\n",
      " 'novel_3c59533158572f3977e5c5e69c597db0' 'AC753' 'AD296'\n",
      " 'novel_6ecbc972f5351ab231e301f96a4b8ad4' 'AD156']\n",
      "99 ['-' 'AK348' 'AM054' 'AK465' 'AO387' 'AJ334' 'AJ811' 'AL764' 'AO500'\n",
      " 'AR329' 'AP612' 'AK970' 'AK343' 'AR026' 'AN587' 'AN166' 'AK665' 'AK467'\n",
      " 'AN588' 'AL760' 'AO065' 'AO075' 'AL950' 'AM050' 'AR244' 'AJ808' 'AJ696'\n",
      " 'AK349' 'AM476' 'AK666' 'AJ333' 'AJ329' 'AN187' 'AO067' 'AJ804' 'AM781'\n",
      " 'AN596' 'AM043' 'AK674' 'AK466' 'AO499' 'AN595' 'AM049' 'AK675' 'AL757'\n",
      " 'AJ812' 'AN188' 'AM034' 'AK344' 'AJ809' 'AL762' 'AL867' 'AP707' 'AK115'\n",
      " 'AM037' 'AK971' 'AK671' 'AM044' 'AK895' 'AM038' 'AJ810' 'AL758' 'AN591'\n",
      " 'AJ802' 'AM033' 'AJ337' 'AN589' 'AM750' 'AQ014' 'AJ548' 'AM751' 'AM035'\n",
      " 'AK897' 'AK500' 'AN597' 'AO498' 'AK664' 'AN167' 'AO069' 'AJ338' 'AO064'\n",
      " 'AK117' 'AO070' 'AM053' 'AJ330' 'AK116' 'AL763' 'AN189' 'AK903' 'AK900'\n",
      " 'AN186' 'AK340' 'AK468' 'AN585' 'AM970' 'AO074' 'AK673' 'AK341' 'AK345']\n"
     ]
    }
   ],
   "source": [
    "mob_all[ (mob_all['primary_cluster_id']!='-') & (mob_all['secondary_cluster_id']!='-') ].mash_nearest_neighbor\n",
    "print(len(mob_all.primary_cluster_id.unique()), mob_all.primary_cluster_id.unique()) #108\n",
    "print(len(mob_all.secondary_cluster_id.unique()), mob_all.secondary_cluster_id.unique()) #98 "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "id": "86db6f8d",
   "metadata": {},
   "outputs": [
    {
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       "0        SRR13999941\n",
       "1        SRR13999941\n",
       "2        SRR13999941\n",
       "3        SRR13999941\n",
       "4        SRR13999941\n",
       "            ...     \n",
       "69961    SRR14026473\n",
       "69962    SRR14026473\n",
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       "69964    SRR14026473\n",
       "69965    SRR14026473\n",
       "Name: Run_accession, Length: 69966, dtype: object"
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     "execution_count": 8,
     "metadata": {},
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   "source": [
    "mob['Run_accession']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "id": "fcdfb181",
   "metadata": {},
   "outputs": [
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       "             count\n",
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       " 'SRR13726546',\n",
       " 'SRR14026522',\n",
       " 'SRR14026470',\n",
       " 'SRR14026549',\n",
       " 'SRR13712378',\n",
       " 'SRR13999929',\n",
       " 'SRR14024975',\n",
       " 'SRR14000587',\n",
       " 'SRR13727021',\n",
       " 'SRR14026463',\n",
       " 'SRR13725710',\n",
       " 'SRR14000025',\n",
       " 'SRR13999937',\n",
       " 'SRR14026506',\n",
       " 'SRR13999919',\n",
       " 'SRR14000000',\n",
       " 'SRR14024993',\n",
       " 'SRR14026445',\n",
       " 'SRR14026448',\n",
       " 'SRR13725687',\n",
       " 'SRR14000004',\n",
       " 'SRR14026484',\n",
       " 'SRR13712492',\n",
       " 'SRR13725730',\n",
       " 'SRR13725707',\n",
       " 'SRR13999942',\n",
       " 'SRR14026493',\n",
       " 'SRR13712503',\n",
       " 'SRR13725696',\n",
       " 'SRR13725734',\n",
       " 'SRR13999921',\n",
       " 'SRR13999985',\n",
       " 'SRR14026509',\n",
       " 'SRR13725694',\n",
       " 'SRR14026459',\n",
       " 'SRR13725688',\n",
       " 'SRR13726550',\n",
       " 'SRR13712494',\n",
       " 'SRR14026520',\n",
       " 'SRR14024948',\n",
       " 'SRR14022754',\n",
       " 'SRR13999986',\n",
       " 'SRR14022767',\n",
       " 'SRR13712388',\n",
       " 'SRR14024998',\n",
       " 'SRR13999948',\n",
       " 'SRR13712385',\n",
       " 'SRR14026468',\n",
       " 'SRR13999997',\n",
       " 'SRR13727002',\n",
       " 'SRR13999951',\n",
       " 'SRR14000590',\n",
       " 'SRR13727019',\n",
       " 'SRR14026486',\n",
       " 'SRR13726588',\n",
       " 'SRR13727035',\n",
       " 'SRR13726521',\n",
       " 'SRR13999927',\n",
       " 'SRR14026498',\n",
       " 'SRR14024994',\n",
       " 'SRR13999967',\n",
       " 'SRR13727029',\n",
       " 'SRR14024953',\n",
       " 'SRR14024991',\n",
       " 'SRR14022765',\n",
       " 'SRR13726506',\n",
       " 'SRR13712374',\n",
       " 'SRR14022753',\n",
       " 'SRR13999979',\n",
       " 'SRR14026471',\n",
       " 'SRR14024961',\n",
       " 'SRR14026446',\n",
       " 'SRR14026458',\n",
       " 'SRR13725715',\n",
       " 'SRR14026491',\n",
       " 'SRR13712381',\n",
       " 'SRR13725717',\n",
       " 'SRR14024966',\n",
       " 'SRR14026478',\n",
       " 'SRR13727001',\n",
       " 'SRR14022751',\n",
       " 'SRR13726532',\n",
       " 'SRR14026505',\n",
       " 'SRR14025001',\n",
       " 'SRR13712497',\n",
       " 'SRR14026481',\n",
       " 'SRR13999999',\n",
       " 'SRR13999974',\n",
       " 'SRR13712362',\n",
       " 'SRR14024995',\n",
       " 'SRR13725728',\n",
       " 'SRR14000607',\n",
       " 'SRR13726594',\n",
       " 'SRR13726520',\n",
       " 'SRR14022750',\n",
       " 'SRR13712504',\n",
       " 'SRR13726576',\n",
       " 'SRR14000011',\n",
       " 'SRR14000598',\n",
       " 'SRR13712382',\n",
       " 'SRR13726593',\n",
       " 'SRR13726517',\n",
       " 'SRR14000007',\n",
       " 'SRR13712391',\n",
       " 'SRR13726536',\n",
       " 'SRR14000026',\n",
       " 'SRR14026488',\n",
       " 'SRR14026472',\n",
       " 'SRR13999962',\n",
       " 'SRR13727034',\n",
       " 'SRR13712383',\n",
       " 'SRR13726555',\n",
       " 'SRR14024980',\n",
       " 'SRR14022741',\n",
       " 'SRR13712392',\n",
       " 'SRR13726578',\n",
       " 'SRR13999970',\n",
       " 'SRR13726530',\n",
       " 'SRR14026501',\n",
       " 'SRR14024999',\n",
       " 'SRR13725713',\n",
       " 'SRR14000022',\n",
       " 'SRR13999913',\n",
       " 'SRR14026500',\n",
       " 'SRR13727013',\n",
       " 'SRR13725732',\n",
       " 'SRR13999990',\n",
       " 'SRR14024971',\n",
       " 'SRR14022774',\n",
       " 'SRR13726527',\n",
       " 'SRR14000029',\n",
       " 'SRR13726524',\n",
       " 'SRR13726505',\n",
       " 'SRR14000610',\n",
       " 'SRR13727033',\n",
       " 'SRR13999922',\n",
       " 'SRR13727032',\n",
       " 'SRR13712512',\n",
       " 'SRR13726537',\n",
       " 'SRR13725731',\n",
       " 'SRR13727003',\n",
       " 'SRR14022760',\n",
       " 'SRR14024979',\n",
       " 'SRR13725718',\n",
       " 'SRR13999940',\n",
       " 'SRR14000608',\n",
       " 'SRR14022755',\n",
       " 'SRR13999994',\n",
       " 'SRR13725703',\n",
       " 'SRR13999934',\n",
       " 'SRR13726569',\n",
       " 'SRR13726515',\n",
       " 'SRR14000006',\n",
       " 'SRR14000028',\n",
       " 'SRR14022736',\n",
       " 'SRR13726523',\n",
       " 'SRR14026440',\n",
       " 'SRR13999914',\n",
       " 'SRR13725714',\n",
       " 'SRR13726516',\n",
       " 'SRR13726568',\n",
       " 'SRR13712370',\n",
       " 'SRR13712364',\n",
       " 'SRR13999924',\n",
       " 'SRR14000021',\n",
       " 'SRR13727017',\n",
       " 'SRR13727030',\n",
       " 'SRR14000602',\n",
       " 'SRR13725704',\n",
       " 'SRR13726564',\n",
       " 'SRR13726559',\n",
       " 'SRR13726543',\n",
       " 'SRR13999915',\n",
       " 'SRR13726503',\n",
       " 'SRR13726511',\n",
       " 'SRR14026476',\n",
       " 'SRR13727012',\n",
       " 'SRR13725698',\n",
       " 'SRR13726508',\n",
       " 'SRR13726560',\n",
       " 'SRR13999950',\n",
       " 'SRR14000002',\n",
       " 'SRR14026487',\n",
       " 'SRR14026499',\n",
       " 'SRR13999941',\n",
       " 'SRR13712390',\n",
       " 'SRR13726565',\n",
       " 'SRR13726579',\n",
       " 'SRR14000592',\n",
       " 'SRR13712522',\n",
       " 'SRR13999963',\n",
       " 'SRR13725723',\n",
       " 'SRR13712366',\n",
       " 'SRR13999925',\n",
       " 'SRR14000588',\n",
       " 'SRR13999947',\n",
       " 'SRR13999946',\n",
       " 'SRR13725720',\n",
       " 'SRR14000601',\n",
       " 'SRR13712376',\n",
       " 'SRR13727024',\n",
       " 'SRR14026508',\n",
       " 'SRR13999981',\n",
       " 'SRR13999956',\n",
       " 'SRR13725691',\n",
       " 'SRR13726545',\n",
       " 'SRR13712525',\n",
       " 'SRR13726533',\n",
       " 'SRR13712369',\n",
       " 'SRR13712518',\n",
       " 'SRR13726553',\n",
       " 'SRR13999916',\n",
       " 'SRR14000599',\n",
       " 'SRR13999965',\n",
       " 'SRR13712387',\n",
       " 'SRR14000612',\n",
       " 'SRR13712367',\n",
       " 'SRR13727022',\n",
       " 'SRR14000609',\n",
       " 'SRR14000001',\n",
       " 'SRR13999959',\n",
       " 'SRR14026489',\n",
       " 'SRR13727026',\n",
       " 'SRR13712380',\n",
       " 'SRR14000605',\n",
       " 'SRR13999968',\n",
       " 'SRR14000591',\n",
       " 'SRR13999991',\n",
       " 'SRR13712379',\n",
       " 'SRR14026512',\n",
       " 'SRR13999960',\n",
       " 'SRR13999993',\n",
       " 'SRR14000613',\n",
       " 'SRR14024967',\n",
       " 'SRR14022734',\n",
       " 'SRR14000597',\n",
       " 'SRR13725701',\n",
       " 'SRR14026513',\n",
       " 'SRR14000611',\n",
       " 'SRR13712384',\n",
       " 'SRR13727028',\n",
       " 'SRR14000600',\n",
       " 'SRR13712373',\n",
       " 'SRR14000604',\n",
       " 'SRR13999945',\n",
       " 'SRR13999943',\n",
       " 'SRR14026443',\n",
       " 'SRR14022758',\n",
       " 'SRR13999961',\n",
       " 'SRR13726563',\n",
       " 'SRR14000016',\n",
       " 'SRR13726504',\n",
       " 'SRR13726513',\n",
       " 'SRR13999920',\n",
       " 'SRR14000589',\n",
       " 'SRR13726586',\n",
       " 'SRR14026507',\n",
       " 'SRR14026548',\n",
       " 'SRR13727015',\n",
       " 'SRR13725686',\n",
       " 'SRR14026474',\n",
       " 'SRR14000008',\n",
       " 'SRR13725689',\n",
       " 'SRR13999964',\n",
       " 'SRR13727014',\n",
       " 'SRR13726535',\n",
       " 'SRR13999980',\n",
       " 'SRR13726566',\n",
       " 'SRR13999957',\n",
       " 'SRR13727027',\n",
       " 'SRR13712377',\n",
       " 'SRR13712389',\n",
       " 'SRR14000023',\n",
       " 'SRR13727009',\n",
       " 'SRR13726525',\n",
       " 'SRR14000586',\n",
       " 'SRR13727025',\n",
       " 'SRR13725735',\n",
       " 'SRR13999928',\n",
       " 'SRR14000018',\n",
       " 'SRR14022756',\n",
       " 'SRR14000027',\n",
       " 'SRR14025003',\n",
       " 'SRR13999977',\n",
       " 'SRR14000013',\n",
       " 'SRR13712386',\n",
       " 'SRR13726542',\n",
       " 'SRR14000015',\n",
       " 'SRR14000596',\n",
       " 'SRR14000603',\n",
       " 'SRR13727008',\n",
       " 'SRR13727005',\n",
       " 'SRR14022748',\n",
       " 'SRR13727031',\n",
       " 'SRR13727020',\n",
       " 'SRR13725697',\n",
       " 'SRR13726538',\n",
       " 'SRR13712363',\n",
       " 'SRR13725726',\n",
       " 'SRR13726577',\n",
       " 'SRR13999923',\n",
       " 'SRR13999972',\n",
       " 'SRR13726575',\n",
       " 'SRR13725716',\n",
       " 'SRR13999933',\n",
       " 'SRR13726580',\n",
       " 'SRR14000020',\n",
       " 'SRR14000005',\n",
       " 'SRR13726574',\n",
       " 'SRR13727006',\n",
       " 'SRR13999944',\n",
       " 'SRR13999926',\n",
       " 'SRR13725693']"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "mob_genomes = mob['Run_accession'].value_counts().to_frame().rename(columns={'Run_accession':'count'})\n",
    "mob_genomes_ls = list(mob_genomes.index)\n",
    "display(mob_genomes)\n",
    "mob_genomes_ls"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "id": "71f4fb32",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "SRR14000009\n",
      "primary_cluster_id\n",
      "-                     421\n",
      "AB530                   7\n",
      "AE312                   7\n",
      "AB915                   4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999966\n",
      "primary_cluster_id\n",
      "-                     273\n",
      "AE315                  15\n",
      "AB528                   3\n",
      "AB529                   3\n",
      "AE310                   3\n",
      "AB530                   2\n",
      "AB759                   2\n",
      "AF632                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026545\n",
      "primary_cluster_id\n",
      "-                     223\n",
      "AC732                  52\n",
      "AB977                  13\n",
      "AH273                   2\n",
      "AA890                   1\n",
      "AA891                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010950\n",
      "primary_cluster_id\n",
      "-                     231\n",
      "AC733                  38\n",
      "AB976                   8\n",
      "AE807                   2\n",
      "AB614                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011034\n",
      "primary_cluster_id\n",
      "-                     197\n",
      "AC731                  52\n",
      "AB760                   8\n",
      "AD100                   6\n",
      "AB369                   5\n",
      "AB756                   3\n",
      "AA893                   2\n",
      "AC537                   2\n",
      "AH273                   2\n",
      "AA890                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725705\n",
      "primary_cluster_id\n",
      "-                     261\n",
      "AB530                   9\n",
      "AD058                   4\n",
      "AB529                   3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026530\n",
      "primary_cluster_id\n",
      "-                     221\n",
      "AC731                  33\n",
      "AB759                   7\n",
      "AC670                   3\n",
      "AB614                   2\n",
      "AB756                   2\n",
      "AD100                   2\n",
      "AA893                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010971\n",
      "primary_cluster_id\n",
      "-                     217\n",
      "AC733                  38\n",
      "AB173                   8\n",
      "AA894                   3\n",
      "AB616                   2\n",
      "AE807                   2\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011033\n",
      "primary_cluster_id\n",
      "-                     204\n",
      "AC731                  36\n",
      "AB173                  11\n",
      "AB756                   5\n",
      "AD910                   4\n",
      "AH273                   2\n",
      "AB614                   1\n",
      "AB615                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010961\n",
      "primary_cluster_id\n",
      "-                     194\n",
      "AC732                  39\n",
      "AB917                  16\n",
      "AD100                   7\n",
      "AB173                   3\n",
      "AB756                   3\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AC534                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011037\n",
      "primary_cluster_id\n",
      "-                     214\n",
      "AC733                  34\n",
      "AB173                   8\n",
      "AD059                   2\n",
      "AA894                   1\n",
      "AB616                   1\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010949\n",
      "primary_cluster_id\n",
      "-                     213\n",
      "AD910                  25\n",
      "AC731                  18\n",
      "AB614                   2\n",
      "AA890                   1\n",
      "AA894                   1\n",
      "AD059                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011018\n",
      "primary_cluster_id\n",
      "-                     207\n",
      "AC733                  30\n",
      "AB173                  12\n",
      "AE807                   3\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AC537                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010935\n",
      "primary_cluster_id\n",
      "-                     191\n",
      "AC732                  44\n",
      "AB173                  15\n",
      "AB915                   2\n",
      "AA893                   1\n",
      "AB616                   1\n",
      "AC670                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010942\n",
      "primary_cluster_id\n",
      "-                     190\n",
      "AC732                  43\n",
      "AB173                  16\n",
      "AB915                   3\n",
      "AC670                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726551\n",
      "primary_cluster_id\n",
      "-                     232\n",
      "AB530                  12\n",
      "AE313                   6\n",
      "AD288                   4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010994\n",
      "primary_cluster_id\n",
      "-                     181\n",
      "AC731                  44\n",
      "AB760                  12\n",
      "AD910                   6\n",
      "AB756                   3\n",
      "AH273                   2\n",
      "AA894                   1\n",
      "AB614                   1\n",
      "AB615                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010981\n",
      "primary_cluster_id\n",
      "-                     208\n",
      "AC733                  34\n",
      "AB614                   2\n",
      "AD059                   2\n",
      "AH273                   2\n",
      "AB756                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010975\n",
      "primary_cluster_id\n",
      "-                     211\n",
      "AC733                  31\n",
      "AD268                   3\n",
      "AB614                   2\n",
      "AH273                   2\n",
      "AB759                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011039\n",
      "primary_cluster_id\n",
      "-                     211\n",
      "AC733                  30\n",
      "AB759                   3\n",
      "AD059                   2\n",
      "AH273                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011026\n",
      "primary_cluster_id\n",
      "-                     213\n",
      "AC733                  22\n",
      "AB173                   3\n",
      "AD907                   3\n",
      "AA894                   2\n",
      "AD058                   2\n",
      "AB616                   1\n",
      "AC536                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010946\n",
      "primary_cluster_id\n",
      "-                     183\n",
      "AC732                  36\n",
      "AB917                  15\n",
      "AB760                   5\n",
      "AB756                   3\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011001\n",
      "primary_cluster_id\n",
      "-                     179\n",
      "AC732                  45\n",
      "AB173                  19\n",
      "AC670                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011002\n",
      "primary_cluster_id\n",
      "-                     196\n",
      "AC733                  29\n",
      "AB173                  13\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AC536                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011003\n",
      "primary_cluster_id\n",
      "-                     196\n",
      "AC733                  33\n",
      "AB173                   8\n",
      "AE672                   2\n",
      "AA894                   1\n",
      "AB616                   1\n",
      "AC536                   1\n",
      "AD059                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011025\n",
      "primary_cluster_id\n",
      "-                     171\n",
      "AC732                  56\n",
      "AB173                   8\n",
      "AB616                   2\n",
      "AA893                   1\n",
      "AC536                   1\n",
      "AC670                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011010\n",
      "primary_cluster_id\n",
      "-                     194\n",
      "AC733                  31\n",
      "AB173                   9\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AB616                   1\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010974\n",
      "primary_cluster_id\n",
      "-                     175\n",
      "AC732                  32\n",
      "AD910                  16\n",
      "AB760                   8\n",
      "AB756                   6\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AB616                   1\n",
      "AC534                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026552\n",
      "primary_cluster_id\n",
      "-                     205\n",
      "AC733                  30\n",
      "AB976                   5\n",
      "AB614                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010987\n",
      "primary_cluster_id\n",
      "-                     203\n",
      "AC733                  30\n",
      "AA894                   3\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010991\n",
      "primary_cluster_id\n",
      "-                     197\n",
      "AC733                  31\n",
      "AB759                   5\n",
      "AA894                   4\n",
      "AB614                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010934\n",
      "primary_cluster_id\n",
      "-                     207\n",
      "AC733                  18\n",
      "AD907                   3\n",
      "AE807                   3\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010970\n",
      "primary_cluster_id\n",
      "-                     177\n",
      "AC732                  56\n",
      "AC535                   3\n",
      "AA893                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010938\n",
      "primary_cluster_id\n",
      "-                     193\n",
      "AC733                  37\n",
      "AA894                   4\n",
      "AC536                   1\n",
      "AD059                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026535\n",
      "primary_cluster_id\n",
      "-                     184\n",
      "AC731                  29\n",
      "AC670                   4\n",
      "AD907                   4\n",
      "AB756                   3\n",
      "AC727                   3\n",
      "AD100                   3\n",
      "AB614                   2\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AB759                   1\n",
      "AC468                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010951\n",
      "primary_cluster_id\n",
      "-                     196\n",
      "AC733                  33\n",
      "AB172                   3\n",
      "AD059                   2\n",
      "AE807                   2\n",
      "AA894                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010993\n",
      "primary_cluster_id\n",
      "-                     189\n",
      "AC733                  33\n",
      "AB173                   9\n",
      "AA894                   1\n",
      "AB616                   1\n",
      "AC536                   1\n",
      "AD059                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011043\n",
      "primary_cluster_id\n",
      "-                     209\n",
      "AC733                  14\n",
      "AA893                   3\n",
      "AD907                   3\n",
      "AB614                   2\n",
      "AD059                   2\n",
      "AB617                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011029\n",
      "primary_cluster_id\n",
      "-                     189\n",
      "AC733                  35\n",
      "AB173                   3\n",
      "AB616                   3\n",
      "AA894                   2\n",
      "AD058                   2\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011007\n",
      "primary_cluster_id\n",
      "-                     194\n",
      "AC733                  32\n",
      "AE672                   3\n",
      "AB614                   2\n",
      "AB759                   2\n",
      "AH273                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010960\n",
      "primary_cluster_id\n",
      "-                     188\n",
      "AC733                  37\n",
      "AB173                   3\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AD100                   2\n",
      "AC536                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026534\n",
      "primary_cluster_id\n",
      "-                     201\n",
      "AC731                  25\n",
      "AB759                   3\n",
      "AD909                   3\n",
      "AB171                   2\n",
      "AA893                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011041\n",
      "primary_cluster_id\n",
      "-                     176\n",
      "AC732                  50\n",
      "AB173                   6\n",
      "AA893                   1\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010978\n",
      "primary_cluster_id\n",
      "-                     189\n",
      "AC733                  33\n",
      "AA894                   4\n",
      "AB117                   2\n",
      "AD059                   2\n",
      "AD268                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011015\n",
      "primary_cluster_id\n",
      "-                     196\n",
      "AC733                  28\n",
      "AA894                   2\n",
      "AB614                   2\n",
      "AD059                   2\n",
      "AD268                   2\n",
      "AB172                   1\n",
      "AC345                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010984\n",
      "primary_cluster_id\n",
      "-                     196\n",
      "AC733                  20\n",
      "AB173                   3\n",
      "AD907                   3\n",
      "AB616                   2\n",
      "AD058                   2\n",
      "AD100                   2\n",
      "AD268                   2\n",
      "AE807                   2\n",
      "AA894                   1\n",
      "AC536                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011006\n",
      "primary_cluster_id\n",
      "-                     191\n",
      "AC733                  34\n",
      "AB173                   3\n",
      "AD059                   2\n",
      "AE807                   2\n",
      "AC537                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010944\n",
      "primary_cluster_id\n",
      "-                     175\n",
      "AC732                  48\n",
      "AB173                   6\n",
      "AB614                   2\n",
      "AA893                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010947\n",
      "primary_cluster_id\n",
      "-                     203\n",
      "AC733                  20\n",
      "AA894                   3\n",
      "AD909                   3\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AD268                   1\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026531\n",
      "primary_cluster_id\n",
      "-                     178\n",
      "AC732                  40\n",
      "AC731                  12\n",
      "AA894                   1\n",
      "AC670                   1\n",
      "AE577                   1\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010995\n",
      "primary_cluster_id\n",
      "-                     196\n",
      "AC733                  31\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AD268                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011035\n",
      "primary_cluster_id\n",
      "-                     180\n",
      "AC733                  38\n",
      "AB173                   4\n",
      "AA894                   3\n",
      "AA769                   2\n",
      "AB616                   2\n",
      "AD058                   2\n",
      "AC536                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026519\n",
      "primary_cluster_id\n",
      "-                     194\n",
      "AC733                  33\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026550\n",
      "primary_cluster_id\n",
      "-                     189\n",
      "AC733                  33\n",
      "AB614                   2\n",
      "AB759                   2\n",
      "AD268                   2\n",
      "AE672                   2\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010940\n",
      "primary_cluster_id\n",
      "-                     185\n",
      "AC733                  33\n",
      "AB173                   3\n",
      "AB616                   2\n",
      "AD058                   2\n",
      "AD100                   2\n",
      "AA890                   1\n",
      "AA891                   1\n",
      "AC536                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011012\n",
      "primary_cluster_id\n",
      "-                     183\n",
      "AC733                  29\n",
      "AB369                  14\n",
      "AD059                   2\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AB614                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010980\n",
      "primary_cluster_id\n",
      "-                     195\n",
      "AC733                  18\n",
      "AB173                  10\n",
      "AD059                   3\n",
      "AD907                   3\n",
      "AB614                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010990\n",
      "primary_cluster_id\n",
      "-                     194\n",
      "AC733                  31\n",
      "AD059                   3\n",
      "AD268                   2\n",
      "AA894                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725724\n",
      "primary_cluster_id\n",
      "-                     221\n",
      "AB530                   5\n",
      "AD058                   4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010976\n",
      "primary_cluster_id\n",
      "-                     169\n",
      "AC731                  18\n",
      "AD910                  16\n",
      "AB173                  14\n",
      "AA894                   3\n",
      "AB756                   3\n",
      "AH273                   2\n",
      "AB614                   1\n",
      "AB615                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010959\n",
      "primary_cluster_id\n",
      "-                     187\n",
      "AC733                  33\n",
      "AD059                   2\n",
      "AD268                   2\n",
      "AE807                   2\n",
      "AA894                   1\n",
      "AB172                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026510\n",
      "primary_cluster_id\n",
      "-                     189\n",
      "AC731                  23\n",
      "AB369                   5\n",
      "AB759                   3\n",
      "AD909                   3\n",
      "AB171                   2\n",
      "AD268                   2\n",
      "AA893                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010996\n",
      "primary_cluster_id\n",
      "-                     169\n",
      "AC731                  28\n",
      "AB760                  12\n",
      "AB615                   6\n",
      "AB756                   6\n",
      "AB614                   2\n",
      "AH273                   2\n",
      "AA894                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010985\n",
      "primary_cluster_id\n",
      "-                     182\n",
      "AC733                  38\n",
      "AA894                   3\n",
      "AA769                   2\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011024\n",
      "primary_cluster_id\n",
      "-                     186\n",
      "AC733                  31\n",
      "AB759                   5\n",
      "AB172                   2\n",
      "AA894                   1\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010967\n",
      "primary_cluster_id\n",
      "-                     176\n",
      "AC733                  35\n",
      "AB173                   4\n",
      "AA894                   3\n",
      "AB616                   2\n",
      "AD059                   2\n",
      "AE672                   2\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010957\n",
      "primary_cluster_id\n",
      "-                     186\n",
      "AC733                  30\n",
      "AB759                   4\n",
      "AA894                   3\n",
      "AB614                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010979\n",
      "primary_cluster_id\n",
      "-                     192\n",
      "AC733                  27\n",
      "AE807                   3\n",
      "AA894                   1\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010952\n",
      "primary_cluster_id\n",
      "-                     182\n",
      "AC732                  34\n",
      "AB918                   5\n",
      "AC537                   2\n",
      "AA890                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011004\n",
      "primary_cluster_id\n",
      "-                     186\n",
      "AC733                  32\n",
      "AD059                   2\n",
      "AD268                   2\n",
      "AA894                   1\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010992\n",
      "primary_cluster_id\n",
      "-                     189\n",
      "AC733                  30\n",
      "AA890                   1\n",
      "AB614                   1\n",
      "AD059                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011016\n",
      "primary_cluster_id\n",
      "-                     193\n",
      "AC733                  29\n",
      "AA894                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011009\n",
      "primary_cluster_id\n",
      "-                     167\n",
      "AC731                  27\n",
      "AB760                  13\n",
      "AB756                   5\n",
      "AD100                   5\n",
      "AH273                   2\n",
      "AA894                   1\n",
      "AB614                   1\n",
      "AB615                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011044\n",
      "primary_cluster_id\n",
      "-                     179\n",
      "AC733                  25\n",
      "AB369                  12\n",
      "AB756                   2\n",
      "AD059                   2\n",
      "AC630                   1\n",
      "AD268                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010963\n",
      "primary_cluster_id\n",
      "-                     178\n",
      "AC733                  31\n",
      "AB173                   4\n",
      "AA894                   3\n",
      "AB616                   2\n",
      "AD059                   2\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010945\n",
      "primary_cluster_id\n",
      "-                     165\n",
      "AC731                  35\n",
      "AB173                  12\n",
      "AB369                   5\n",
      "AB756                   4\n",
      "AH273                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010999\n",
      "primary_cluster_id\n",
      "-                     187\n",
      "AC733                  28\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AB172                   1\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026514\n",
      "primary_cluster_id\n",
      "-                     161\n",
      "AC732                  44\n",
      "AB918                   6\n",
      "AB756                   3\n",
      "AC535                   3\n",
      "AD100                   3\n",
      "AA892                   1\n",
      "AA893                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010997\n",
      "primary_cluster_id\n",
      "-                     189\n",
      "AC733                  24\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AB117                   1\n",
      "AB172                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010943\n",
      "primary_cluster_id\n",
      "-                     175\n",
      "AC733                  33\n",
      "AD100                   4\n",
      "AA894                   3\n",
      "AB614                   1\n",
      "AD059                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026538\n",
      "primary_cluster_id\n",
      "-                     169\n",
      "AC732                  40\n",
      "AB918                   6\n",
      "AB756                   4\n",
      "AA892                   1\n",
      "AA893                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011014\n",
      "primary_cluster_id\n",
      "-                     184\n",
      "AC733                  22\n",
      "AB173                   5\n",
      "AA894                   3\n",
      "AB614                   2\n",
      "AE807                   2\n",
      "AC345                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010968\n",
      "primary_cluster_id\n",
      "-                     194\n",
      "AC733                  19\n",
      "AD909                   3\n",
      "AD059                   2\n",
      "AA894                   1\n",
      "AB172                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011038\n",
      "primary_cluster_id\n",
      "-                     181\n",
      "AC733                  33\n",
      "AA894                   3\n",
      "AB759                   3\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010956\n",
      "primary_cluster_id\n",
      "-                     183\n",
      "AC733                  33\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011040\n",
      "primary_cluster_id\n",
      "-                     184\n",
      "AC733                  31\n",
      "AB614                   2\n",
      "AB976                   2\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010972\n",
      "primary_cluster_id\n",
      "-                     183\n",
      "AC733                  29\n",
      "AD059                   2\n",
      "AA894                   1\n",
      "AB614                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010954\n",
      "primary_cluster_id\n",
      "-                     182\n",
      "AC733                  29\n",
      "AD059                   2\n",
      "AD268                   2\n",
      "AA894                   1\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010962\n",
      "primary_cluster_id\n",
      "-                     181\n",
      "AC733                  32\n",
      "AD059                   2\n",
      "AA894                   1\n",
      "AB172                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011023\n",
      "primary_cluster_id\n",
      "-                     189\n",
      "AC733                  19\n",
      "AD909                   3\n",
      "AB614                   2\n",
      "AD059                   2\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010939\n",
      "primary_cluster_id\n",
      "-                     180\n",
      "AC733                  28\n",
      "AB172                   5\n",
      "AB614                   1\n",
      "AB976                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010986\n",
      "primary_cluster_id\n",
      "-                     165\n",
      "AC733                  35\n",
      "AB173                   4\n",
      "AA769                   3\n",
      "AA894                   3\n",
      "AD058                   2\n",
      "AC536                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011021\n",
      "primary_cluster_id\n",
      "-                     177\n",
      "AC733                  29\n",
      "AA894                   4\n",
      "AB614                   2\n",
      "AD059                   2\n",
      "AB172                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026521\n",
      "primary_cluster_id\n",
      "-                     175\n",
      "AC733                  27\n",
      "AD268                   4\n",
      "AB172                   2\n",
      "AE672                   2\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010941\n",
      "primary_cluster_id\n",
      "-                     178\n",
      "AC733                  29\n",
      "AA894                   4\n",
      "AB172                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011011\n",
      "primary_cluster_id\n",
      "-                     169\n",
      "AC733                  30\n",
      "AB173                   7\n",
      "AA894                   2\n",
      "AB616                   2\n",
      "AD058                   2\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010937\n",
      "primary_cluster_id\n",
      "-                     168\n",
      "AC733                  20\n",
      "AD910                  11\n",
      "AA894                   3\n",
      "AB173                   3\n",
      "AD058                   2\n",
      "AE807                   2\n",
      "AB616                   1\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010969\n",
      "primary_cluster_id\n",
      "-                     154\n",
      "AC731                  26\n",
      "AB173                  11\n",
      "AD906                   8\n",
      "AB756                   7\n",
      "AE672                   2\n",
      "AA890                   1\n",
      "AB117                   1\n",
      "AC536                   1\n",
      "AC631                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010982\n",
      "primary_cluster_id\n",
      "-                     176\n",
      "AC733                  23\n",
      "AA894                   4\n",
      "AB173                   3\n",
      "AB614                   3\n",
      "AD059                   2\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011031\n",
      "primary_cluster_id\n",
      "-                     174\n",
      "AC733                  29\n",
      "AB172                   2\n",
      "AD059                   2\n",
      "AE807                   2\n",
      "AB614                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011036\n",
      "primary_cluster_id\n",
      "-                     173\n",
      "AC733                  31\n",
      "AA894                   3\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010966\n",
      "primary_cluster_id\n",
      "-                     175\n",
      "AC733                  27\n",
      "AA894                   3\n",
      "AB171                   2\n",
      "AE807                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026546\n",
      "primary_cluster_id\n",
      "-                     170\n",
      "AC731                  26\n",
      "AD909                   9\n",
      "AH273                   2\n",
      "AA890                   1\n",
      "AA891                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010989\n",
      "primary_cluster_id\n",
      "-                     170\n",
      "AC733                  28\n",
      "AA894                   3\n",
      "AD059                   2\n",
      "AD268                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010948\n",
      "primary_cluster_id\n",
      "-                     175\n",
      "AC733                  14\n",
      "AB172                   4\n",
      "AA894                   3\n",
      "AD909                   3\n",
      "AE807                   3\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AC345                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010933\n",
      "primary_cluster_id\n",
      "-                     162\n",
      "AD910                  16\n",
      "AC733                  14\n",
      "AD268                   4\n",
      "AB614                   2\n",
      "AE672                   2\n",
      "AA890                   1\n",
      "AB756                   1\n",
      "AC537                   1\n",
      "AD059                   1\n",
      "AE577                   1\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026523\n",
      "primary_cluster_id\n",
      "-                     160\n",
      "AC731                  39\n",
      "AB171                   2\n",
      "AD909                   2\n",
      "AA890                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011027\n",
      "primary_cluster_id\n",
      "-                     179\n",
      "AC733                  18\n",
      "AD909                   3\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AB172                   1\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011028\n",
      "primary_cluster_id\n",
      "-                     176\n",
      "AC733                  18\n",
      "AD907                   3\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AE807                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026529\n",
      "primary_cluster_id\n",
      "-                     162\n",
      "AC731                  24\n",
      "AC733                  12\n",
      "AB759                   3\n",
      "AB171                   2\n",
      "AA893                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026554\n",
      "primary_cluster_id\n",
      "-                     176\n",
      "AC733                  17\n",
      "AD907                   3\n",
      "AE807                   3\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010998\n",
      "primary_cluster_id\n",
      "-                     179\n",
      "AC733                  17\n",
      "AD907                   3\n",
      "AA894                   2\n",
      "AD059                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026553\n",
      "primary_cluster_id\n",
      "-                     155\n",
      "AC732                  36\n",
      "AC731                   8\n",
      "AA894                   1\n",
      "AB117                   1\n",
      "AC670                   1\n",
      "AE577                   1\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022764\n",
      "primary_cluster_id\n",
      "-                     180\n",
      "AD907                  12\n",
      "AD269                   5\n",
      "AD268                   3\n",
      "AG002                   3\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726582\n",
      "primary_cluster_id\n",
      "-                     191\n",
      "AD288                   7\n",
      "AD055                   2\n",
      "AD058                   2\n",
      "AD569                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011000\n",
      "primary_cluster_id\n",
      "-                     165\n",
      "AC733                  19\n",
      "AB172                   8\n",
      "AA894                   3\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011013\n",
      "primary_cluster_id\n",
      "-                     174\n",
      "AC733                  15\n",
      "AD907                   4\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AC345                   1\n",
      "AE577                   1\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010965\n",
      "primary_cluster_id\n",
      "-                     161\n",
      "AC733                  26\n",
      "AA894                   4\n",
      "AB172                   2\n",
      "AD059                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026516\n",
      "primary_cluster_id\n",
      "-                     147\n",
      "AC732                  36\n",
      "AC731                   8\n",
      "AA894                   1\n",
      "AC630                   1\n",
      "AC670                   1\n",
      "AE577                   1\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010958\n",
      "primary_cluster_id\n",
      "-                     159\n",
      "AC733                  29\n",
      "AA894                   3\n",
      "AD059                   2\n",
      "AB614                   1\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010988\n",
      "primary_cluster_id\n",
      "-                     157\n",
      "AC732                  20\n",
      "AB918                   5\n",
      "AD909                   4\n",
      "AA890                   1\n",
      "AA893                   1\n",
      "AB615                   1\n",
      "AC537                   1\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011032\n",
      "primary_cluster_id\n",
      "-                     151\n",
      "AC733                  24\n",
      "AA769                   4\n",
      "AA894                   3\n",
      "AB173                   3\n",
      "AC536                   1\n",
      "AD059                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011020\n",
      "primary_cluster_id\n",
      "-                     152\n",
      "AC733                  29\n",
      "AA891                   2\n",
      "AH273                   2\n",
      "AB117                   1\n",
      "AB173                   1\n",
      "AB756                   1\n",
      "AC670                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026555\n",
      "primary_cluster_id\n",
      "-                     148\n",
      "AC733                  35\n",
      "AB171                   2\n",
      "AA893                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011005\n",
      "primary_cluster_id\n",
      "-                     139\n",
      "AC732                  34\n",
      "AA891                   2\n",
      "AB756                   2\n",
      "AD059                   2\n",
      "AA890                   1\n",
      "AB172                   1\n",
      "AB615                   1\n",
      "AB617                   1\n",
      "AC630                   1\n",
      "AE577                   1\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011008\n",
      "primary_cluster_id\n",
      "-                     140\n",
      "AC733                  19\n",
      "AC731                  16\n",
      "AD906                   7\n",
      "AB614                   1\n",
      "AD059                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010955\n",
      "primary_cluster_id\n",
      "-                     135\n",
      "AC732                  30\n",
      "AB756                   7\n",
      "AD909                   5\n",
      "AA891                   2\n",
      "AB171                   2\n",
      "AA890                   1\n",
      "AB617                   1\n",
      "AE577                   1\n",
      "AH188                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999992\n",
      "primary_cluster_id\n",
      "-                     168\n",
      "AE315                   8\n",
      "AB529                   6\n",
      "AB528                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026551\n",
      "primary_cluster_id\n",
      "-                     127\n",
      "AC732                  47\n",
      "AB117                   1\n",
      "AB756                   1\n",
      "AC670                   1\n",
      "AE672                   1\n",
      "AH188                   1\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026515\n",
      "primary_cluster_id\n",
      "-                     128\n",
      "AC732                  45\n",
      "AB756                   2\n",
      "AA890                   1\n",
      "AB117                   1\n",
      "AH188                   1\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726585\n",
      "primary_cluster_id\n",
      "-                     168\n",
      "AD288                   7\n",
      "AD569                   1\n",
      "AF632                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14011017\n",
      "primary_cluster_id\n",
      "-                     151\n",
      "AC733                  15\n",
      "AD907                   3\n",
      "AB172                   2\n",
      "AB614                   2\n",
      "AD268                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022783\n",
      "primary_cluster_id\n",
      "-                     147\n",
      "AC727                  25\n",
      "AH273                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14010973\n",
      "primary_cluster_id\n",
      "-                     140\n",
      "AC733                  18\n",
      "AD910                   8\n",
      "AC536                   2\n",
      "AB614                   1\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022737\n",
      "primary_cluster_id\n",
      "-                     159\n",
      "AD269                   4\n",
      "AG002                   3\n",
      "AD268                   2\n",
      "AD907                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727011\n",
      "primary_cluster_id\n",
      "-                     168\n",
      "AD058                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026517\n",
      "primary_cluster_id\n",
      "-                     133\n",
      "AC733                  25\n",
      "AB977                   4\n",
      "AC536                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026453\n",
      "primary_cluster_id\n",
      "-                     153\n",
      "AD907                  11\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022769\n",
      "primary_cluster_id\n",
      "-                     121\n",
      "AC731                  30\n",
      "AB756                   5\n",
      "AA894                   2\n",
      "AA890                   1\n",
      "AE577                   1\n",
      "AE672                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712372\n",
      "primary_cluster_id\n",
      "-                     150\n",
      "AE314                   6\n",
      "AD582                   3\n",
      "AE309                   1\n",
      "AF632                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726554\n",
      "primary_cluster_id\n",
      "-                     160\n",
      "AF632                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999988\n",
      "primary_cluster_id\n",
      "-                     134\n",
      "AB528                  15\n",
      "AE315                   5\n",
      "AB759                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999975\n",
      "primary_cluster_id\n",
      "-                     136\n",
      "AE315                   9\n",
      "AE309                   6\n",
      "AC345                   3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024954\n",
      "primary_cluster_id\n",
      "-                     142\n",
      "AD907                   8\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726528\n",
      "primary_cluster_id\n",
      "-                     150\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024964\n",
      "primary_cluster_id\n",
      "-                     147\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022780\n",
      "primary_cluster_id\n",
      "-                     124\n",
      "AC727                  23\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024985\n",
      "primary_cluster_id\n",
      "-                     134\n",
      "AC727                  13\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999911\n",
      "primary_cluster_id\n",
      "-                     138\n",
      "AB530                   3\n",
      "AB915                   3\n",
      "AD058                   1\n",
      "AG970                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024969\n",
      "primary_cluster_id\n",
      "-                     135\n",
      "AB756                   8\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022779\n",
      "primary_cluster_id\n",
      "-                     126\n",
      "AC727                  16\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999978\n",
      "primary_cluster_id\n",
      "-                     138\n",
      "AE310                   3\n",
      "AC345                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022763\n",
      "primary_cluster_id\n",
      "-                     115\n",
      "AD908                  23\n",
      "AD268                   2\n",
      "AD569                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000019\n",
      "primary_cluster_id\n",
      "-                     117\n",
      "AE315                  13\n",
      "AB758                   6\n",
      "AB528                   2\n",
      "AB529                   2\n",
      "AA366                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024984\n",
      "primary_cluster_id\n",
      "-                     119\n",
      "AB756                  12\n",
      "AF662                   7\n",
      "AA894                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14025000\n",
      "primary_cluster_id\n",
      "-                     128\n",
      "AB756                   7\n",
      "AA894                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024976\n",
      "primary_cluster_id\n",
      "-                     127\n",
      "AB756                   9\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026543\n",
      "primary_cluster_id\n",
      "-                     131\n",
      "AB756                   2\n",
      "AD907                   2\n",
      "AD569                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999938\n",
      "primary_cluster_id\n",
      "-                     121\n",
      "AB530                   6\n",
      "AE313                   6\n",
      "AD059                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726571\n",
      "primary_cluster_id\n",
      "-                     132\n",
      "AB756                   1\n",
      "AD055                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026541\n",
      "primary_cluster_id\n",
      "-                     128\n",
      "AD907                   3\n",
      "AD569                   1\n",
      "AG184                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024986\n",
      "primary_cluster_id\n",
      "-                     126\n",
      "AD582                   4\n",
      "AB756                   2\n",
      "AD055                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999935\n",
      "primary_cluster_id\n",
      "-                     123\n",
      "AE315                   7\n",
      "AB528                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022776\n",
      "primary_cluster_id\n",
      "-                     95\n",
      "AC728                 26\n",
      "AD100                  3\n",
      "AD910                  3\n",
      "AA894                  2\n",
      "AC537                  1\n",
      "AE672                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026542\n",
      "primary_cluster_id\n",
      "-                     124\n",
      "AB756                   5\n",
      "AH273                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726529\n",
      "primary_cluster_id\n",
      "-                     129\n",
      "AD296                   1\n",
      "AD709                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026447\n",
      "primary_cluster_id\n",
      "-                     117\n",
      "AC727                  14\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000010\n",
      "primary_cluster_id\n",
      "-                     118\n",
      "AB530                   9\n",
      "AB529                   2\n",
      "AE310                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024989\n",
      "primary_cluster_id\n",
      "-                     113\n",
      "AC727                  13\n",
      "AA890                   1\n",
      "AC607                   1\n",
      "AD569                   1\n",
      "AD907                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022738\n",
      "primary_cluster_id\n",
      "-                     115\n",
      "AD908                  14\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999958\n",
      "primary_cluster_id\n",
      "-                     120\n",
      "AB530                   4\n",
      "AE312                   3\n",
      "AB528                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022735\n",
      "primary_cluster_id\n",
      "-                     119\n",
      "AD910                   7\n",
      "AA893                   2\n",
      "AE577                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026528\n",
      "primary_cluster_id\n",
      "-                     111\n",
      "AC727                  14\n",
      "AD265                   1\n",
      "AD569                   1\n",
      "AD907                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000003\n",
      "primary_cluster_id\n",
      "-                     111\n",
      "AB528                  10\n",
      "AB530                   6\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026477\n",
      "primary_cluster_id\n",
      "-                     119\n",
      "AC727                   8\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024974\n",
      "primary_cluster_id\n",
      "-                     104\n",
      "AC729                  12\n",
      "AB756                   5\n",
      "AD058                   3\n",
      "AB616                   1\n",
      "AD265                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022772\n",
      "primary_cluster_id\n",
      "-                     105\n",
      "AC727                  20\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725699\n",
      "primary_cluster_id\n",
      "-                     111\n",
      "AB528                   9\n",
      "AB527                   2\n",
      "AF632                   1\n",
      "AG003                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022759\n",
      "primary_cluster_id\n",
      "-                     104\n",
      "AC727                  17\n",
      "AD907                   1\n",
      "AG184                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022771\n",
      "primary_cluster_id\n",
      "-                     98\n",
      "AC731                 21\n",
      "AB756                  2\n",
      "AE672                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022773\n",
      "primary_cluster_id\n",
      "-                     103\n",
      "AD907                  11\n",
      "AD908                   5\n",
      "AA896                   1\n",
      "AD268                   1\n",
      "AH273                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999918\n",
      "primary_cluster_id\n",
      "-                     96\n",
      "AE315                 13\n",
      "AB530                  6\n",
      "AF662                  3\n",
      "AE310                  2\n",
      "AB117                  1\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725722\n",
      "primary_cluster_id\n",
      "-                     115\n",
      "AB530                   5\n",
      "AE312                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024960\n",
      "primary_cluster_id\n",
      "-                     116\n",
      "AB756                   5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026467\n",
      "primary_cluster_id\n",
      "-                     113\n",
      "AD910                   5\n",
      "AB756                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000017\n",
      "primary_cluster_id\n",
      "-                     115\n",
      "AB530                   3\n",
      "AD058                   1\n",
      "AE312                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022781\n",
      "primary_cluster_id\n",
      "-                     100\n",
      "AC727                  16\n",
      "AD907                   3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999987\n",
      "primary_cluster_id\n",
      "-                     102\n",
      "AB530                   5\n",
      "AB529                   4\n",
      "AE315                   4\n",
      "AE310                   3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726507\n",
      "primary_cluster_id\n",
      "-                     102\n",
      "AB530                   8\n",
      "AD058                   4\n",
      "AB529                   3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026502\n",
      "primary_cluster_id\n",
      "-                     106\n",
      "AC727                   8\n",
      "AD265                   1\n",
      "AD907                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026442\n",
      "primary_cluster_id\n",
      "-                     106\n",
      "AC727                   6\n",
      "AB172                   2\n",
      "AD569                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024956\n",
      "primary_cluster_id\n",
      "-                     97\n",
      "AC727                 14\n",
      "AB915                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726581\n",
      "primary_cluster_id\n",
      "-                     113\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726587\n",
      "primary_cluster_id\n",
      "-                     100\n",
      "AF568                  11\n",
      "AB756                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026465\n",
      "primary_cluster_id\n",
      "-                     110\n",
      "AB172                   3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022768\n",
      "primary_cluster_id\n",
      "-                     94\n",
      "AD908                  7\n",
      "AD268                  5\n",
      "AG002                  4\n",
      "AB020                  1\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024990\n",
      "primary_cluster_id\n",
      "-                     88\n",
      "AC729                  9\n",
      "AB756                  4\n",
      "AE311                  4\n",
      "AD582                  3\n",
      "AA894                  1\n",
      "AB616                  1\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024949\n",
      "primary_cluster_id\n",
      "-                     104\n",
      "AD907                   7\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000595\n",
      "primary_cluster_id\n",
      "-                     98\n",
      "AE312                  7\n",
      "AB530                  6\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726561\n",
      "primary_cluster_id\n",
      "-                     107\n",
      "AD297                   2\n",
      "AB528                   1\n",
      "AF632                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024950\n",
      "primary_cluster_id\n",
      "-                     92\n",
      "AC727                 18\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026511\n",
      "primary_cluster_id\n",
      "-                     91\n",
      "AC727                 10\n",
      "AD908                  6\n",
      "AD268                  2\n",
      "AA896                  1\n",
      "AB977                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712511\n",
      "primary_cluster_id\n",
      "-                     98\n",
      "AB530                  8\n",
      "AE312                  2\n",
      "AB174                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000024\n",
      "primary_cluster_id\n",
      "-                     92\n",
      "AB530                 10\n",
      "AE312                  5\n",
      "AE314                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726556\n",
      "primary_cluster_id\n",
      "-                     101\n",
      "AB530                   6\n",
      "AB528                   1\n",
      "AE312                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024962\n",
      "primary_cluster_id\n",
      "-                     103\n",
      "AC727                   4\n",
      "AB756                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022778\n",
      "primary_cluster_id\n",
      "-                     83\n",
      "AC727                 18\n",
      "AD907                  4\n",
      "AB977                  2\n",
      "AD710                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000614\n",
      "primary_cluster_id\n",
      "-                     90\n",
      "AB530                 11\n",
      "AB529                  6\n",
      "AB973                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727000\n",
      "primary_cluster_id\n",
      "-                     100\n",
      "AB528                   6\n",
      "AE312                   2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026479\n",
      "primary_cluster_id\n",
      "-                     92\n",
      "AC727                 14\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026496\n",
      "primary_cluster_id\n",
      "-                     98\n",
      "AD055                  4\n",
      "AD910                  3\n",
      "AB756                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000606\n",
      "primary_cluster_id\n",
      "-                     95\n",
      "AE315                  8\n",
      "AB527                  2\n",
      "AB529                  1\n",
      "AD100                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026490\n",
      "primary_cluster_id\n",
      "-                     101\n",
      "AB173                   3\n",
      "AB756                   3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026485\n",
      "primary_cluster_id\n",
      "-                     103\n",
      "AB172                   3\n",
      "AC670                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026450\n",
      "primary_cluster_id\n",
      "-                     95\n",
      "AC727                  8\n",
      "AD058                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024981\n",
      "primary_cluster_id\n",
      "-                     99\n",
      "AC345                  7\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022782\n",
      "primary_cluster_id\n",
      "-                     87\n",
      "AC731                 12\n",
      "AB756                  6\n",
      "AE672                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14025002\n",
      "primary_cluster_id\n",
      "-                     97\n",
      "AB756                  8\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022740\n",
      "primary_cluster_id\n",
      "-                     105\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026475\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "AC727                 16\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999912\n",
      "primary_cluster_id\n",
      "-                     96\n",
      "AB174                  5\n",
      "AE312                  2\n",
      "AF632                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999995\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "AB530                 14\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024957\n",
      "primary_cluster_id\n",
      "-                     88\n",
      "AC727                 13\n",
      "AB915                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024959\n",
      "primary_cluster_id\n",
      "-                     93\n",
      "AD907                  8\n",
      "AC544                  2\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022749\n",
      "primary_cluster_id\n",
      "-                     103\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024970\n",
      "primary_cluster_id\n",
      "-                     98\n",
      "AD910                  4\n",
      "AB756                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999983\n",
      "primary_cluster_id\n",
      "-                     92\n",
      "AB530                 10\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026503\n",
      "primary_cluster_id\n",
      "-                     92\n",
      "AD582                  6\n",
      "AB756                  3\n",
      "AB915                  1\n",
      "AD055                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026455\n",
      "primary_cluster_id\n",
      "-                     90\n",
      "AC727                 12\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726539\n",
      "primary_cluster_id\n",
      "-                     100\n",
      "AD055                   1\n",
      "AF632                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000012\n",
      "primary_cluster_id\n",
      "-                     85\n",
      "AE309                  9\n",
      "AB530                  8\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026461\n",
      "primary_cluster_id\n",
      "-                     93\n",
      "AC727                  8\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999984\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "AB530                  7\n",
      "AD582                  6\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999917\n",
      "primary_cluster_id\n",
      "-                     100\n",
      "AB530                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726573\n",
      "primary_cluster_id\n",
      "-                     100\n",
      "AD055                   1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022766\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "AC727                 10\n",
      "AC345                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024972\n",
      "primary_cluster_id\n",
      "-                     94\n",
      "AC751                  5\n",
      "AC670                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024963\n",
      "primary_cluster_id\n",
      "-                     93\n",
      "AB756                  6\n",
      "AB920                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725706\n",
      "primary_cluster_id\n",
      "-                     95\n",
      "AB756                  4\n",
      "AE309                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026466\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "AC727                 10\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022777\n",
      "primary_cluster_id\n",
      "-                     84\n",
      "AD908                  6\n",
      "AD268                  4\n",
      "AG002                  4\n",
      "AB020                  1\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024983\n",
      "primary_cluster_id\n",
      "-                     81\n",
      "AB756                  9\n",
      "AC729                  7\n",
      "AA894                  1\n",
      "AB616                  1\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022757\n",
      "primary_cluster_id\n",
      "-                     87\n",
      "AC729                 11\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999954\n",
      "primary_cluster_id\n",
      "-                     93\n",
      "AB530                  4\n",
      "AB529                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726510\n",
      "primary_cluster_id\n",
      "-                     97\n",
      "AE310                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024996\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "AB756                 10\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026492\n",
      "primary_cluster_id\n",
      "-                     91\n",
      "AD907                  8\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026460\n",
      "primary_cluster_id\n",
      "-                     88\n",
      "AC727                 10\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726549\n",
      "primary_cluster_id\n",
      "-                     96\n",
      "AE310                  2\n",
      "AF761                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725695\n",
      "primary_cluster_id\n",
      "-                     82\n",
      "AB528                  6\n",
      "AB530                  6\n",
      "AE309                  3\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024958\n",
      "primary_cluster_id\n",
      "-                     85\n",
      "AC727                 13\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026449\n",
      "primary_cluster_id\n",
      "-                     85\n",
      "AC727                 12\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727010\n",
      "primary_cluster_id\n",
      "-                     98\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022745\n",
      "primary_cluster_id\n",
      "-                     86\n",
      "AD910                  7\n",
      "AC345                  4\n",
      "AC670                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024978\n",
      "primary_cluster_id\n",
      "-                     88\n",
      "AB756                  6\n",
      "AE311                  3\n",
      "AB616                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712365\n",
      "primary_cluster_id\n",
      "-                     97\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712517\n",
      "primary_cluster_id\n",
      "-                     93\n",
      "AB915                  4\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026494\n",
      "primary_cluster_id\n",
      "-                     83\n",
      "AC727                 11\n",
      "AD058                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726541\n",
      "primary_cluster_id\n",
      "-                     91\n",
      "AB530                  4\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024952\n",
      "primary_cluster_id\n",
      "-                     85\n",
      "AC727                 12\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022746\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "AC727                  8\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022762\n",
      "primary_cluster_id\n",
      "-                     87\n",
      "AD910                  5\n",
      "AB756                  3\n",
      "AA893                  1\n",
      "AE577                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022770\n",
      "primary_cluster_id\n",
      "-                     74\n",
      "AC726                 10\n",
      "AD908                  8\n",
      "AD269                  2\n",
      "AD907                  2\n",
      "AD569                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026497\n",
      "primary_cluster_id\n",
      "-                     82\n",
      "AC727                  9\n",
      "AB756                  4\n",
      "AB616                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727018\n",
      "primary_cluster_id\n",
      "-                     83\n",
      "AF568                  8\n",
      "AD582                  4\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026452\n",
      "primary_cluster_id\n",
      "-                     79\n",
      "AC731                 12\n",
      "AB756                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026547\n",
      "primary_cluster_id\n",
      "-                     80\n",
      "AC727                 16\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026524\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "AC727                 18\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726518\n",
      "primary_cluster_id\n",
      "-                     76\n",
      "AB530                  7\n",
      "AE309                  6\n",
      "AE314                  6\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000594\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "AE314                  5\n",
      "AC833                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026504\n",
      "primary_cluster_id\n",
      "-                     83\n",
      "AC727                 10\n",
      "AD569                  1\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026473\n",
      "primary_cluster_id\n",
      "-                     79\n",
      "AC729                 13\n",
      "AB759                  2\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026533\n",
      "primary_cluster_id\n",
      "-                     80\n",
      "AD907                 12\n",
      "AB756                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999939\n",
      "primary_cluster_id\n",
      "-                     86\n",
      "AB530                  7\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999998\n",
      "primary_cluster_id\n",
      "-                     65\n",
      "AB530                 11\n",
      "AE315                  8\n",
      "AE312                  6\n",
      "AB528                  3\n",
      "AB117                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022747\n",
      "primary_cluster_id\n",
      "-                     78\n",
      "AD906                 12\n",
      "AA894                  2\n",
      "AD058                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727023\n",
      "primary_cluster_id\n",
      "-                     79\n",
      "AE314                  6\n",
      "AB528                  5\n",
      "AB756                  3\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024988\n",
      "primary_cluster_id\n",
      "-                     90\n",
      "AC727                  3\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026544\n",
      "primary_cluster_id\n",
      "-                     81\n",
      "AD907                 13\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999932\n",
      "primary_cluster_id\n",
      "-                     91\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022739\n",
      "primary_cluster_id\n",
      "-                     76\n",
      "AD908                 12\n",
      "AD055                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026483\n",
      "primary_cluster_id\n",
      "-                     80\n",
      "AC728                  8\n",
      "AB756                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026454\n",
      "primary_cluster_id\n",
      "-                     78\n",
      "AC727                 12\n",
      "AD058                  2\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026457\n",
      "primary_cluster_id\n",
      "-                     93\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026532\n",
      "primary_cluster_id\n",
      "-                     78\n",
      "AB756                 13\n",
      "AA894                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726547\n",
      "primary_cluster_id\n",
      "-                     85\n",
      "AD058                  5\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022744\n",
      "primary_cluster_id\n",
      "-                     73\n",
      "AD907                 11\n",
      "AD908                  5\n",
      "AD268                  2\n",
      "AD569                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726512\n",
      "primary_cluster_id\n",
      "-                     81\n",
      "AB530                  9\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726544\n",
      "primary_cluster_id\n",
      "-                     88\n",
      "AB530                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725700\n",
      "primary_cluster_id\n",
      "-                     81\n",
      "AB530                  5\n",
      "AD058                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026462\n",
      "primary_cluster_id\n",
      "-                     87\n",
      "AB756                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712368\n",
      "primary_cluster_id\n",
      "-                     82\n",
      "AE314                  7\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999936\n",
      "primary_cluster_id\n",
      "-                     86\n",
      "AB756                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026456\n",
      "primary_cluster_id\n",
      "-                     88\n",
      "AD569                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726509\n",
      "primary_cluster_id\n",
      "-                     80\n",
      "AB918                  5\n",
      "AC345                  2\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000585\n",
      "primary_cluster_id\n",
      "-                     86\n",
      "AB528                  2\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727004\n",
      "primary_cluster_id\n",
      "-                     89\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026526\n",
      "primary_cluster_id\n",
      "-                     71\n",
      "AD908                 12\n",
      "AD269                  3\n",
      "AD907                  1\n",
      "AF662                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022743\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "AC727                 10\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999971\n",
      "primary_cluster_id\n",
      "-                     84\n",
      "AD582                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725711\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "AB530                  7\n",
      "AB529                  3\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022775\n",
      "primary_cluster_id\n",
      "-                     72\n",
      "AC727                 16\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999996\n",
      "primary_cluster_id\n",
      "-                     74\n",
      "AE315                 10\n",
      "AB530                  2\n",
      "AB528                  1\n",
      "AB756                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026480\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AC727                 18\n",
      "AC607                  1\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022752\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "AD907                 18\n",
      "AA896                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024973\n",
      "primary_cluster_id\n",
      "-                     74\n",
      "AC727                 13\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026444\n",
      "primary_cluster_id\n",
      "-                     76\n",
      "AB756                 11\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712361\n",
      "primary_cluster_id\n",
      "-                     76\n",
      "AB529                  4\n",
      "AD288                  4\n",
      "AF663                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026464\n",
      "primary_cluster_id\n",
      "-                     75\n",
      "AC727                 11\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000593\n",
      "primary_cluster_id\n",
      "-                     81\n",
      "AE312                  4\n",
      "AD582                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712371\n",
      "primary_cluster_id\n",
      "-                     79\n",
      "AE309                  3\n",
      "AC833                  2\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999953\n",
      "primary_cluster_id\n",
      "-                     72\n",
      "AB529                  6\n",
      "AE315                  6\n",
      "AB528                  1\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022761\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AC727                  8\n",
      "AC726                  6\n",
      "AB756                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726526\n",
      "primary_cluster_id\n",
      "-                     86\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999931\n",
      "primary_cluster_id\n",
      "-                     74\n",
      "AB530                  5\n",
      "AE312                  5\n",
      "AB922                  1\n",
      "AD059                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726591\n",
      "primary_cluster_id\n",
      "-                     83\n",
      "AD055                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026482\n",
      "primary_cluster_id\n",
      "-                     72\n",
      "AC727                 12\n",
      "AB759                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026495\n",
      "primary_cluster_id\n",
      "-                     81\n",
      "AB756                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999930\n",
      "primary_cluster_id\n",
      "-                     84\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712520\n",
      "primary_cluster_id\n",
      "-                     73\n",
      "AE312                  7\n",
      "AB530                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026451\n",
      "primary_cluster_id\n",
      "-                     72\n",
      "AC727                 11\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026527\n",
      "primary_cluster_id\n",
      "-                     82\n",
      "AA891                  1\n",
      "AD569                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726552\n",
      "primary_cluster_id\n",
      "-                     79\n",
      "AB530                  3\n",
      "AD059                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726540\n",
      "primary_cluster_id\n",
      "-                     73\n",
      "AB530                  7\n",
      "AD058                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726514\n",
      "primary_cluster_id\n",
      "-                     80\n",
      "AD058                  2\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726548\n",
      "primary_cluster_id\n",
      "-                     72\n",
      "AB918                  4\n",
      "AC345                  4\n",
      "AE312                  3\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999969\n",
      "primary_cluster_id\n",
      "-                     82\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726589\n",
      "primary_cluster_id\n",
      "-                     78\n",
      "AB756                  3\n",
      "AD414                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712375\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AB529                  8\n",
      "AD288                  4\n",
      "AE309                  3\n",
      "AC754                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022742\n",
      "primary_cluster_id\n",
      "-                     83\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725709\n",
      "primary_cluster_id\n",
      "-                     74\n",
      "AB756                  7\n",
      "AB528                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726534\n",
      "primary_cluster_id\n",
      "-                     75\n",
      "AD058                  4\n",
      "AE315                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026469\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AC727                 15\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999989\n",
      "primary_cluster_id\n",
      "-                     75\n",
      "AE315                  6\n",
      "AB528                  1\n",
      "AB756                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726546\n",
      "primary_cluster_id\n",
      "-                     73\n",
      "AC345                  3\n",
      "AE312                  3\n",
      "AA366                  2\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026522\n",
      "primary_cluster_id\n",
      "-                     80\n",
      "AB756                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026470\n",
      "primary_cluster_id\n",
      "-                     63\n",
      "AC729                  9\n",
      "AB756                  7\n",
      "AA894                  1\n",
      "AB616                  1\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026549\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "AB756                  3\n",
      "AB918                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712378\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "AE312                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999929\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "AB527                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024975\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "AC728                 14\n",
      "AB756                  5\n",
      "AB616                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000587\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "AE315                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727021\n",
      "primary_cluster_id\n",
      "-                     80\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026463\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AC728                 13\n",
      "AB756                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725710\n",
      "primary_cluster_id\n",
      "-                     76\n",
      "AE315                  3\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000025\n",
      "primary_cluster_id\n",
      "-                     79\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999937\n",
      "primary_cluster_id\n",
      "-                     71\n",
      "AB528                  4\n",
      "AE309                  3\n",
      "AB530                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026506\n",
      "primary_cluster_id\n",
      "-                     71\n",
      "AB756                  8\n",
      "AA894                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999919\n",
      "primary_cluster_id\n",
      "-                     74\n",
      "AB530                  5\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000000\n",
      "primary_cluster_id\n",
      "-                     78\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024993\n",
      "primary_cluster_id\n",
      "-                     73\n",
      "AB756                  6\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026445\n",
      "primary_cluster_id\n",
      "-                     75\n",
      "AD907                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026448\n",
      "primary_cluster_id\n",
      "-                     65\n",
      "AC727                 13\n",
      "AD265                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725687\n",
      "primary_cluster_id\n",
      "-                     72\n",
      "AD058                  4\n",
      "AB756                  2\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000004\n",
      "primary_cluster_id\n",
      "-                     70\n",
      "AB530                  7\n",
      "AD058                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026484\n",
      "primary_cluster_id\n",
      "-                     79\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712492\n",
      "primary_cluster_id                    \n",
      "-                                         78\n",
      "novel_9198ae084b830436dc78b2c36a55d225     1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725730\n",
      "primary_cluster_id\n",
      "-                     73\n",
      "AB530                  3\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725707\n",
      "primary_cluster_id\n",
      "-                     71\n",
      "AB530                  6\n",
      "AD058                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999942\n",
      "primary_cluster_id\n",
      "-                     76\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026493\n",
      "primary_cluster_id\n",
      "-                     75\n",
      "AB756                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712503\n",
      "primary_cluster_id\n",
      "-                     76\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725696\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AB528                 11\n",
      "AD288                  6\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725734\n",
      "primary_cluster_id\n",
      "-                     78\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999921\n",
      "primary_cluster_id\n",
      "-                     69\n",
      "AB528                  5\n",
      "AE312                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999985\n",
      "primary_cluster_id\n",
      "-                     78\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026509\n",
      "primary_cluster_id\n",
      "-                     63\n",
      "AC727                 13\n",
      "AC729                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725694\n",
      "primary_cluster_id\n",
      "-                     75\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026459\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AB756                  8\n",
      "AA894                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725688\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726550\n",
      "primary_cluster_id\n",
      "-                     74\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712494\n",
      "primary_cluster_id\n",
      "-                     77\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026520\n",
      "primary_cluster_id\n",
      "-                     69\n",
      "AE633                  4\n",
      "AB918                  2\n",
      "AB756                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024948\n",
      "primary_cluster_id\n",
      "-                     73\n",
      "AB756                  2\n",
      "AD055                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022754\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "AC727                 10\n",
      "AD269                  3\n",
      "AA891                  1\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999986\n",
      "primary_cluster_id\n",
      "-                     74\n",
      "AD058                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022767\n",
      "primary_cluster_id\n",
      "-                     69\n",
      "AC727                  5\n",
      "AD709                  1\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712388\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AD288                  4\n",
      "AF663                  2\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024998\n",
      "primary_cluster_id\n",
      "-                     71\n",
      "AB756                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999948\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "AB530                  5\n",
      "AE310                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712385\n",
      "primary_cluster_id\n",
      "-                     69\n",
      "AE314                  4\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026468\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "AC727                 12\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999997\n",
      "primary_cluster_id\n",
      "-                     62\n",
      "AB530                  7\n",
      "AB528                  3\n",
      "AE310                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727002\n",
      "primary_cluster_id\n",
      "-                     69\n",
      "AB756                  3\n",
      "AC670                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999951\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "AB530                  4\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000590\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AB915                  4\n",
      "AB530                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727019\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AD288                  6\n",
      "AD569                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026486\n",
      "primary_cluster_id\n",
      "-                     62\n",
      "AC727                 10\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726588\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AB756                  3\n",
      "AC670                  2\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727035\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AB528                  5\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726521\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AE312                  3\n",
      "AB530                  2\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999927\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "AF632                  2\n",
      "AB117                  1\n",
      "AB642                  1\n",
      "AB756                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026498\n",
      "primary_cluster_id\n",
      "-                     62\n",
      "AC727                  8\n",
      "AD058                  1\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024994\n",
      "primary_cluster_id\n",
      "-                     72\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999967\n",
      "primary_cluster_id\n",
      "-                     71\n",
      "AA769                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727029\n",
      "primary_cluster_id\n",
      "-                     72\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024953\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "AB756                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024991\n",
      "primary_cluster_id\n",
      "-                     71\n",
      "AB756                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022765\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AC727                 11\n",
      "AD907                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726506\n",
      "primary_cluster_id\n",
      "-                     71\n",
      "AB756                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712374\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "AF662                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022753\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "AC727                  9\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999979\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AA769                  2\n",
      "AB117                  1\n",
      "AB530                  1\n",
      "AC670                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026471\n",
      "primary_cluster_id\n",
      "-                     62\n",
      "AC727                  9\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024961\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AD907                  3\n",
      "AB756                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026446\n",
      "primary_cluster_id\n",
      "-                     62\n",
      "AD910                  8\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026458\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AC727                 10\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725715\n",
      "primary_cluster_id\n",
      "-                     65\n",
      "AD058                  3\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026491\n",
      "primary_cluster_id\n",
      "-                     70\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712381\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "AD055                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725717\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AE312                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024966\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AB756                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026478\n",
      "primary_cluster_id\n",
      "-                     66\n",
      "AB756                  3\n",
      "AD055                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727001\n",
      "primary_cluster_id\n",
      "-                     69\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022751\n",
      "primary_cluster_id\n",
      "-                     65\n",
      "AC731                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726532\n",
      "primary_cluster_id\n",
      "-                     65\n",
      "AE312                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026505\n",
      "primary_cluster_id\n",
      "-                     56\n",
      "AC727                 12\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14025001\n",
      "primary_cluster_id\n",
      "-                     65\n",
      "AB756                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712497\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026481\n",
      "primary_cluster_id\n",
      "-                     64\n",
      "AB756                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999999\n",
      "primary_cluster_id\n",
      "-                     58\n",
      "AB530                  8\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999974\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712362\n",
      "primary_cluster_id\n",
      "-                     57\n",
      "AD288                  4\n",
      "AE312                  2\n",
      "AF663                  2\n",
      "AD569                  1\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024995\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725728\n",
      "primary_cluster_id\n",
      "-                     68\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000607\n",
      "primary_cluster_id\n",
      "-                     60\n",
      "AB915                  3\n",
      "AB530                  2\n",
      "AE312                  2\n",
      "AB117                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726594\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726520\n",
      "primary_cluster_id\n",
      "-                     60\n",
      "AB915                  4\n",
      "AB530                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022750\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712504\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726576\n",
      "primary_cluster_id\n",
      "-                     67\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000011\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "AB528                  4\n",
      "AB915                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000598\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AB530                  7\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712382\n",
      "primary_cluster_id\n",
      "-                     58\n",
      "AG970                  4\n",
      "AF662                  3\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726593\n",
      "primary_cluster_id\n",
      "-                     65\n",
      "AD058                  1\n",
      "AF662                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726517\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AE312                  6\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000007\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "AE309                  5\n",
      "AE314                  4\n",
      "AD058                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712391\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "AC726                  9\n",
      "AE313                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726536\n",
      "primary_cluster_id\n",
      "-                     57\n",
      "AD058                  4\n",
      "AB530                  3\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000026\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "AB530                  2\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026488\n",
      "primary_cluster_id\n",
      "-                     64\n",
      "AB172                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026472\n",
      "primary_cluster_id\n",
      "-                     64\n",
      "AB756                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999962\n",
      "primary_cluster_id\n",
      "-                     62\n",
      "AB530                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727034\n",
      "primary_cluster_id\n",
      "-                     63\n",
      "AD058                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712383\n",
      "primary_cluster_id\n",
      "-                     62\n",
      "AE314                  2\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726555\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AB530                  3\n",
      "AE312                  2\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024980\n",
      "primary_cluster_id\n",
      "-                     60\n",
      "AB756                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022741\n",
      "primary_cluster_id\n",
      "-                     57\n",
      "AC727                  6\n",
      "AA893                  1\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712392\n",
      "primary_cluster_id                    \n",
      "-                                         59\n",
      "AE313                                      1\n",
      "AF632                                      1\n",
      "AG970                                      1\n",
      "novel_1a033aeec961423a98d1e337f28b31b5     1\n",
      "novel_3c59533158572f3977e5c5e69c597db0     1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726578\n",
      "primary_cluster_id\n",
      "-                     62\n",
      "AD288                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999970\n",
      "primary_cluster_id\n",
      "-                     54\n",
      "AE313                  5\n",
      "AD058                  3\n",
      "AB530                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726530\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AB530                  4\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026501\n",
      "primary_cluster_id\n",
      "-                     57\n",
      "AC727                  6\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024999\n",
      "primary_cluster_id\n",
      "-                     57\n",
      "AC727                  6\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725713\n",
      "primary_cluster_id\n",
      "-                     63\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000022\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "AB530                  4\n",
      "AD058                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999913\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AF632                  2\n",
      "AB530                  1\n",
      "AD100                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026500\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AC731                  8\n",
      "AG002                  3\n",
      "AD907                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727013\n",
      "primary_cluster_id\n",
      "-                     58\n",
      "AD288                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725732\n",
      "primary_cluster_id\n",
      "-                     56\n",
      "AD058                  4\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999990\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AB915                  5\n",
      "AB530                  3\n",
      "AB528                  2\n",
      "AB922                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024971\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AB756                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022774\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AD908                 15\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726527\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "AD058                  5\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000029\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AE311                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726524\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726505\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "AB530                  3\n",
      "AE312                  2\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000610\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AB530                  6\n",
      "AD058                  2\n",
      "AE312                  2\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727033\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999922\n",
      "primary_cluster_id\n",
      "-                     57\n",
      "AB530                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727032\n",
      "primary_cluster_id\n",
      "-                     56\n",
      "AB172                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712512\n",
      "primary_cluster_id\n",
      "-                     56\n",
      "AD582                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726537\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725731\n",
      "primary_cluster_id\n",
      "-                     58\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727003\n",
      "primary_cluster_id                    \n",
      "-                                         58\n",
      "novel_6ecbc972f5351ab231e301f96a4b8ad4     2\n",
      "AD569                                      1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022760\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024979\n",
      "primary_cluster_id\n",
      "-                     61\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725718\n",
      "primary_cluster_id\n",
      "-                     56\n",
      "AD058                  3\n",
      "AB530                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999940\n",
      "primary_cluster_id\n",
      "-                     57\n",
      "AE315                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000608\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AB530                  6\n",
      "AD058                  2\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022755\n",
      "primary_cluster_id\n",
      "-                     46\n",
      "AD908                 10\n",
      "AD268                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999994\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725703\n",
      "primary_cluster_id\n",
      "-                     53\n",
      "AD582                  5\n",
      "AB756                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999934\n",
      "primary_cluster_id\n",
      "-                     58\n",
      "AE672                  1\n",
      "AF717                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726569\n",
      "primary_cluster_id\n",
      "-                     56\n",
      "AD288                  2\n",
      "AD569                  1\n",
      "AF662                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726515\n",
      "primary_cluster_id\n",
      "-                     54\n",
      "AD058                  3\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000006\n",
      "primary_cluster_id\n",
      "-                     59\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000028\n",
      "primary_cluster_id\n",
      "-                     54\n",
      "AB530                  4\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022736\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "AB756                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726523\n",
      "primary_cluster_id\n",
      "-                     51\n",
      "AB915                  4\n",
      "AB530                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026440\n",
      "primary_cluster_id\n",
      "-                     52\n",
      "AD582                  3\n",
      "AB756                  2\n",
      "AD288                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999914\n",
      "primary_cluster_id\n",
      "-                     58\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725714\n",
      "primary_cluster_id\n",
      "-                     48\n",
      "AD582                  5\n",
      "AE311                  4\n",
      "AD288                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726516\n",
      "primary_cluster_id\n",
      "-                     48\n",
      "AD058                  6\n",
      "AB530                  4\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726568\n",
      "primary_cluster_id\n",
      "-                     58\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712370\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AB528                  7\n",
      "AE312                  1\n",
      "AE313                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712364\n",
      "primary_cluster_id\n",
      "-                     46\n",
      "AF663                  4\n",
      "AD288                  3\n",
      "AD569                  1\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999924\n",
      "primary_cluster_id\n",
      "-                     56\n",
      "AE315                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000021\n",
      "primary_cluster_id\n",
      "-                     56\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727017\n",
      "primary_cluster_id\n",
      "-                     52\n",
      "AD058                  2\n",
      "AC670                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727030\n",
      "primary_cluster_id\n",
      "-                     51\n",
      "AB530                  2\n",
      "AB915                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000602\n",
      "primary_cluster_id\n",
      "-                     51\n",
      "AB530                  4\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725704\n",
      "primary_cluster_id\n",
      "-                     48\n",
      "AD058                  3\n",
      "AE312                  3\n",
      "AB530                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726564\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AD288                  4\n",
      "AB527                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726559\n",
      "primary_cluster_id\n",
      "-                     53\n",
      "AE312                  2\n",
      "AB530                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726543\n",
      "primary_cluster_id\n",
      "-                     51\n",
      "AB174                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999915\n",
      "primary_cluster_id\n",
      "-                     54\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726503\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "AD055                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726511\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AE312                  4\n",
      "AB756                  3\n",
      "AC833                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026476\n",
      "primary_cluster_id\n",
      "-                     51\n",
      "AD910                  3\n",
      "AD582                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727012\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725698\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726508\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AD058                  3\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726560\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AB918                  4\n",
      "AB530                  2\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999950\n",
      "primary_cluster_id\n",
      "-                     55\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000002\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AE312                  3\n",
      "AB530                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026487\n",
      "primary_cluster_id\n",
      "-                     54\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026499\n",
      "primary_cluster_id\n",
      "-                     54\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999941\n",
      "primary_cluster_id\n",
      "-                     54\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712390\n",
      "primary_cluster_id\n",
      "-                     44\n",
      "AD288                  6\n",
      "AF663                  2\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726565\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AC670                  3\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726579\n",
      "primary_cluster_id\n",
      "-                     54\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000592\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AB530                  2\n",
      "AE315                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712522\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AB530                  3\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999963\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AD058                  3\n",
      "AB530                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725723\n",
      "primary_cluster_id\n",
      "-                     52\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712366\n",
      "primary_cluster_id\n",
      "-                     46\n",
      "AB527                  4\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999925\n",
      "primary_cluster_id\n",
      "-                     52\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000588\n",
      "primary_cluster_id\n",
      "-                     49\n",
      "AB174                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999947\n",
      "primary_cluster_id\n",
      "-                     45\n",
      "AB915                  4\n",
      "AB530                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999946\n",
      "primary_cluster_id\n",
      "-                     51\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725720\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AD058                  3\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000601\n",
      "primary_cluster_id\n",
      "-                     52\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712376\n",
      "primary_cluster_id\n",
      "-                     45\n",
      "AB528                  2\n",
      "AE309                  2\n",
      "AF632                  2\n",
      "AE313                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727024\n",
      "primary_cluster_id\n",
      "-                     49\n",
      "AE312                  2\n",
      "AB530                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026508\n",
      "primary_cluster_id\n",
      "-                     52\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999981\n",
      "primary_cluster_id\n",
      "-                     45\n",
      "AD058                  5\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999956\n",
      "primary_cluster_id\n",
      "-                     51\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725691\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AE312                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726545\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AB915                  4\n",
      "AE312                  3\n",
      "AB530                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712525\n",
      "primary_cluster_id\n",
      "-                     46\n",
      "AB530                  2\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726533\n",
      "primary_cluster_id\n",
      "-                     48\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712369\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712518\n",
      "primary_cluster_id\n",
      "-                     43\n",
      "AB918                  3\n",
      "AB530                  2\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726553\n",
      "primary_cluster_id\n",
      "-                     48\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999916\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AB530                  7\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000599\n",
      "primary_cluster_id\n",
      "-                     49\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999965\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712387\n",
      "primary_cluster_id\n",
      "-                     49\n",
      "AC753                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000612\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712367\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AE312                  2\n",
      "AD055                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727022\n",
      "primary_cluster_id\n",
      "-                     50\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000609\n",
      "primary_cluster_id\n",
      "-                     46\n",
      "AB530                  1\n",
      "AD058                  1\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000001\n",
      "primary_cluster_id\n",
      "-                     49\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999959\n",
      "primary_cluster_id\n",
      "-                     46\n",
      "AB528                  2\n",
      "AE315                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026489\n",
      "primary_cluster_id\n",
      "-                     49\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727026\n",
      "primary_cluster_id\n",
      "-                     39\n",
      "AE312                 10\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712380\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AD288                  4\n",
      "AF632                  1\n",
      "AF663                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000605\n",
      "primary_cluster_id\n",
      "-                     43\n",
      "AD058                  4\n",
      "AE315                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999968\n",
      "primary_cluster_id\n",
      "-                     43\n",
      "AD058                  3\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000591\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AB530                  3\n",
      "AD058                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999991\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712379\n",
      "primary_cluster_id\n",
      "-                     44\n",
      "AB528                  2\n",
      "AC833                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026512\n",
      "primary_cluster_id\n",
      "-                     47\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999960\n",
      "primary_cluster_id\n",
      "-                     43\n",
      "AB973                  2\n",
      "AB528                  1\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999993\n",
      "primary_cluster_id\n",
      "-                     43\n",
      "AE312                  2\n",
      "AB530                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000613\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AD582                  3\n",
      "AB528                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14024967\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AB756                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022734\n",
      "primary_cluster_id\n",
      "-                     40\n",
      "AD907                  4\n",
      "AB759                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000597\n",
      "primary_cluster_id\n",
      "-                     46\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725701\n",
      "primary_cluster_id\n",
      "-                     43\n",
      "AC670                  2\n",
      "AE309                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026513\n",
      "primary_cluster_id\n",
      "-                     46\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000611\n",
      "primary_cluster_id\n",
      "-                     45\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712384\n",
      "primary_cluster_id\n",
      "-                     39\n",
      "AB918                  5\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727028\n",
      "primary_cluster_id\n",
      "-                     37\n",
      "AE311                  5\n",
      "AB756                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000600\n",
      "primary_cluster_id\n",
      "-                     45\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712373\n",
      "primary_cluster_id\n",
      "-                     37\n",
      "AE312                  3\n",
      "AE314                  2\n",
      "AC345                  1\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000604\n",
      "primary_cluster_id\n",
      "-                     41\n",
      "AD058                  2\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999945\n",
      "primary_cluster_id\n",
      "-                     40\n",
      "AE312                  2\n",
      "AB530                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999943\n",
      "primary_cluster_id\n",
      "-                     38\n",
      "AE312                  3\n",
      "AB530                  2\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026443\n",
      "primary_cluster_id\n",
      "-                     44\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022758\n",
      "primary_cluster_id\n",
      "-                     44\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999961\n",
      "primary_cluster_id\n",
      "-                     44\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726563\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AD582                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000016\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726504\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "AD156                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726513\n",
      "primary_cluster_id\n",
      "-                     40\n",
      "AE315                  2\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999920\n",
      "primary_cluster_id\n",
      "-                     38\n",
      "AD058                  3\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000589\n",
      "primary_cluster_id\n",
      "-                     39\n",
      "AD058                  2\n",
      "AB530                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726586\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026507\n",
      "primary_cluster_id\n",
      "-                     41\n",
      "AB756                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026548\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727015\n",
      "primary_cluster_id\n",
      "-                     42\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725686\n",
      "primary_cluster_id\n",
      "-                     34\n",
      "AD058                  4\n",
      "AB530                  3\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14026474\n",
      "primary_cluster_id\n",
      "-                     41\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000008\n",
      "primary_cluster_id\n",
      "-                     41\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725689\n",
      "primary_cluster_id\n",
      "-                     37\n",
      "AB530                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999964\n",
      "primary_cluster_id\n",
      "-                     40\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727014\n",
      "primary_cluster_id\n",
      "-                     40\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726535\n",
      "primary_cluster_id\n",
      "-                     39\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999980\n",
      "primary_cluster_id\n",
      "-                     36\n",
      "AB915                  3\n",
      "AB922                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726566\n",
      "primary_cluster_id\n",
      "-                     36\n",
      "AD288                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999957\n",
      "primary_cluster_id\n",
      "-                     39\n",
      "AB530                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727027\n",
      "primary_cluster_id\n",
      "-                     38\n",
      "AB530                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712377\n",
      "primary_cluster_id\n",
      "-                     32\n",
      "AG970                  4\n",
      "AA215                  1\n",
      "AF662                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712389\n",
      "primary_cluster_id\n",
      "-                     33\n",
      "AF662                  3\n",
      "AF632                  1\n",
      "AG970                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000023\n",
      "primary_cluster_id\n",
      "-                     37\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727009\n",
      "primary_cluster_id\n",
      "-                     38\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726525\n",
      "primary_cluster_id\n",
      "-                     37\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000586\n",
      "primary_cluster_id\n",
      "-                     37\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727025\n",
      "primary_cluster_id\n",
      "-                     33\n",
      "AD582                  4\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725735\n",
      "primary_cluster_id\n",
      "-                     36\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999928\n",
      "primary_cluster_id\n",
      "-                     36\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000018\n",
      "primary_cluster_id\n",
      "-                     35\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022756\n",
      "primary_cluster_id\n",
      "-                     34\n",
      "AC729                  1\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000027\n",
      "primary_cluster_id\n",
      "-                     35\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14025003\n",
      "primary_cluster_id\n",
      "-                     36\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999977\n",
      "primary_cluster_id\n",
      "-                     32\n",
      "AB530                  2\n",
      "AE312                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000013\n",
      "primary_cluster_id\n",
      "-                     36\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712386\n",
      "primary_cluster_id\n",
      "-                     36\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726542\n",
      "primary_cluster_id\n",
      "-                     32\n",
      "AB530                  2\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000015\n",
      "primary_cluster_id\n",
      "-                     32\n",
      "AE315                  2\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000596\n",
      "primary_cluster_id\n",
      "-                     35\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000603\n",
      "primary_cluster_id\n",
      "-                     35\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727008\n",
      "primary_cluster_id\n",
      "-                     31\n",
      "AD415                  1\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727005\n",
      "primary_cluster_id\n",
      "-                     29\n",
      "AE311                  5\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14022748\n",
      "primary_cluster_id\n",
      "-                     28\n",
      "AD908                  5\n",
      "AD907                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727031\n",
      "primary_cluster_id\n",
      "-                     30\n",
      "AD288                  3\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727020\n",
      "primary_cluster_id\n",
      "-                     32\n",
      "AB528                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725697\n",
      "primary_cluster_id\n",
      "-                     28\n",
      "AB527                  2\n",
      "AF662                  2\n",
      "AD569                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726538\n",
      "primary_cluster_id\n",
      "-                     28\n",
      "AB530                  2\n",
      "AE312                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13712363\n",
      "primary_cluster_id\n",
      "-                     28\n",
      "AA366                  1\n",
      "AB973                  1\n",
      "AD569                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725726\n",
      "primary_cluster_id\n",
      "-                     30\n",
      "AD055                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726577\n",
      "primary_cluster_id\n",
      "-                     25\n",
      "AD288                  3\n",
      "AD569                  1\n",
      "AD582                  1\n",
      "AF632                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999923\n",
      "primary_cluster_id\n",
      "-                     30\n",
      "AE310                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999972\n",
      "primary_cluster_id\n",
      "-                     29\n",
      "AD582                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726575\n",
      "primary_cluster_id\n",
      "-                     28\n",
      "AD582                  2\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725716\n",
      "primary_cluster_id\n",
      "-                     26\n",
      "AD582                  2\n",
      "AD058                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999933\n",
      "primary_cluster_id\n",
      "-                     29\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726580\n",
      "primary_cluster_id\n",
      "-                     29\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000020\n",
      "primary_cluster_id\n",
      "-                     26\n",
      "AA366                  1\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR14000005\n",
      "primary_cluster_id\n",
      "-                     27\n",
      "AE315                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13726574\n",
      "primary_cluster_id\n",
      "-                     26\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13727006\n",
      "primary_cluster_id\n",
      "-                     25\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999944\n",
      "primary_cluster_id\n",
      "-                     24\n",
      "AE312                  1\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13999926\n",
      "primary_cluster_id\n",
      "-                     24\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n",
      "SRR13725693\n",
      "primary_cluster_id\n",
      "-                     19\n",
      "dtype: int64\n",
      "%%%%%%%%%%%%%%%%%%%%%%%%\n",
      "\n"
     ]
    }
   ],
   "source": [
    "mob_cluster = mob.groupby('Run_accession')\n",
    "\n",
    "\n",
    "count_ls = []\n",
    "for i in mob_genomes_ls:\n",
    "    print(i)\n",
    "    temp = mob_cluster.get_group(i)[['primary_cluster_id']].value_counts()\n",
    "    print(temp)\n",
    "    count_ls.append(temp)\n",
    "    print('%%%%%%%%%%%%%%%%%%%%%%%%')\n",
    "    print()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "id": "2b8db8bf",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/pandas/core/generic.py:4150: PerformanceWarning: dropping on a non-lexsorted multi-index without a level parameter may impact performance.\n",
      "  obj = obj._drop_axis(labels, axis, level=level, errors=errors)\n"
     ]
    }
   ],
   "source": [
    "primary_cluster = pd.concat(count_ls,axis=1).drop(labels=['-'],axis=0)\n",
    "primary_cluster.rename(\n",
    "    columns={i:j for i,j in zip(primary_cluster.columns,mob_genomes_ls)}, inplace=True\n",
    ")\n",
    "prim = primary_cluster.reset_index().rename(columns={'primary_cluster_id':'cluster_id'}).fillna(0)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "id": "e06a8cbe",
   "metadata": {},
   "outputs": [
    {
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       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Run_accession</th>\n",
       "      <th>AA215</th>\n",
       "      <th>AA366</th>\n",
       "      <th>AA769</th>\n",
       "      <th>AA890</th>\n",
       "      <th>AA891</th>\n",
       "      <th>AA892</th>\n",
       "      <th>AA893</th>\n",
       "      <th>AA894</th>\n",
       "      <th>AA896</th>\n",
       "      <th>...</th>\n",
       "      <th>Teicoplanin</th>\n",
       "      <th>Doxycycline</th>\n",
       "      <th>Erythromycin</th>\n",
       "      <th>Nitrofurantoin</th>\n",
       "      <th>Gentamicin</th>\n",
       "      <th>Linezolid</th>\n",
       "      <th>Levofloxacin</th>\n",
       "      <th>Quin</th>\n",
       "      <th>Streptomycin</th>\n",
       "      <th>Tigecycline</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>SRR14000009</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>SRR13999966</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>SRR14026545</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>SRR14010950</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>SRR14011034</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>2.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>R</td>\n",
       "      <td>R</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>642</th>\n",
       "      <td>SRR13726574</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>643</th>\n",
       "      <td>SRR13727006</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>644</th>\n",
       "      <td>SRR13999944</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>645</th>\n",
       "      <td>SRR13999926</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>646</th>\n",
       "      <td>SRR13725693</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>647 rows × 122 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "    Run_accession  AA215  AA366  AA769  AA890  AA891  AA892  AA893  AA894  \\\n",
       "0     SRR14000009    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "1     SRR13999966    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "2     SRR14026545    0.0    0.0    0.0    1.0    1.0    0.0    0.0    0.0   \n",
       "3     SRR14010950    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "4     SRR14011034    0.0    0.0    0.0    1.0    0.0    0.0    2.0    0.0   \n",
       "..            ...    ...    ...    ...    ...    ...    ...    ...    ...   \n",
       "642   SRR13726574    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "643   SRR13727006    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "644   SRR13999944    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "645   SRR13999926    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "646   SRR13725693    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "\n",
       "     AA896  ...  Teicoplanin  Doxycycline  Erythromycin  Nitrofurantoin  \\\n",
       "0      0.0  ...            S            I             R               S   \n",
       "1      0.0  ...            S            S             I               S   \n",
       "2      0.0  ...            S            S             S               S   \n",
       "3      0.0  ...            I            S             R               S   \n",
       "4      0.0  ...            R            R             R               S   \n",
       "..     ...  ...          ...          ...           ...             ...   \n",
       "642    0.0  ...            S            R             S               S   \n",
       "643    0.0  ...            S            S             I               S   \n",
       "644    0.0  ...            S            R             I               S   \n",
       "645    0.0  ...            S            R             I               S   \n",
       "646    0.0  ...            S            S             I               S   \n",
       "\n",
       "     Gentamicin  Linezolid  Levofloxacin  Quin  Streptomycin  Tigecycline  \n",
       "0             S          S             S     R             S            S  \n",
       "1             S          S             S     I             S            S  \n",
       "2             R          S             R     R             S            S  \n",
       "3             S          S             R     S             S            S  \n",
       "4             S          S             R     S             I            S  \n",
       "..          ...        ...           ...   ...           ...          ...  \n",
       "642           S          S             S     R             S            S  \n",
       "643           S          S             S     R             S            S  \n",
       "644           S          S             S     R             S            S  \n",
       "645           S          S             S     I             S            S  \n",
       "646           S          R             S     R             I            S  \n",
       "\n",
       "[647 rows x 122 columns]"
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "prim_only = prim.copy().set_index('cluster_id').fillna(0)\n",
    "prim_only = prim_only.T.reset_index().rename(columns={'index':'Run_accession'})\n",
    "prim_xy_pre= pd.merge(prim_only, meta, on=\"Run_accession\")\n",
    "prim_xy_pre"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "id": "afb85cf3",
   "metadata": {},
   "outputs": [],
   "source": [
    "prim_Xy_Vancomycin = prim_xy_pre[prim_xy_pre['Vancomycin'].isin(['R','S','S '])].replace(['S'], 0).replace(['S '], 0).replace(['R'],1).set_index('Run_accession')\n",
    "prim_Xy_Doxycycline = prim_xy_pre[prim_xy_pre['Doxycycline'].isin(['R','S'])].replace(['S'], 0).replace(['R'],1).set_index('Run_accession')\n",
    "prim_Xy_Erythromycin = prim_xy_pre[prim_xy_pre['Erythromycin'].isin(['R','S'])].replace(['S'], 0).replace(['R'],1).set_index('Run_accession')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "id": "7ebbd47d",
   "metadata": {
    "code_folding": []
   },
   "outputs": [],
   "source": [
    "prim_xy_pre_copy = prim_xy_pre.copy()\n",
    "for column in prim_xy_pre_copy.iloc[:,1:109]:\n",
    "    prim_xy_pre_copy[column].values[prim_xy_pre_copy[column] > 1] = 1\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "id": "48336e64",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Run_accession\n",
      "['SRR14000009' 'SRR13999966' 'SRR14026545' 'SRR14010950' 'SRR14011034'\n",
      " 'SRR13725705' 'SRR14026530' 'SRR14010971' 'SRR14011033' 'SRR14010961'\n",
      " 'SRR14011037' 'SRR14010949' 'SRR14011018' 'SRR14010935' 'SRR14010942'\n",
      " 'SRR13726551' 'SRR14010994' 'SRR14010981' 'SRR14010975' 'SRR14011039'\n",
      " 'SRR14011026' 'SRR14010946' 'SRR14011001' 'SRR14011002' 'SRR14011003'\n",
      " 'SRR14011025' 'SRR14011010' 'SRR14010974' 'SRR14026552' 'SRR14010987'\n",
      " 'SRR14010991' 'SRR14010934' 'SRR14010970' 'SRR14010938' 'SRR14026535'\n",
      " 'SRR14010951' 'SRR14010993' 'SRR14011043' 'SRR14011029' 'SRR14011007'\n",
      " 'SRR14010960' 'SRR14026534' 'SRR14011041' 'SRR14010978' 'SRR14011015'\n",
      " 'SRR14010984' 'SRR14011006' 'SRR14010944' 'SRR14010947' 'SRR14026531'\n",
      " 'SRR14010995' 'SRR14011035' 'SRR14026519' 'SRR14026550' 'SRR14010940'\n",
      " 'SRR14011012' 'SRR14010980' 'SRR14010990' 'SRR13725724' 'SRR14010976'\n",
      " 'SRR14010959' 'SRR14026510' 'SRR14010996' 'SRR14010985' 'SRR14011024'\n",
      " 'SRR14010967' 'SRR14010957' 'SRR14010979' 'SRR14010952' 'SRR14011004'\n",
      " 'SRR14010992' 'SRR14011016' 'SRR14011009' 'SRR14011044' 'SRR14010963'\n",
      " 'SRR14010945' 'SRR14010999' 'SRR14026514' 'SRR14010997' 'SRR14010943'\n",
      " 'SRR14026538' 'SRR14011014' 'SRR14010968' 'SRR14011038' 'SRR14010956'\n",
      " 'SRR14011040' 'SRR14010972' 'SRR14010954' 'SRR14010962' 'SRR14011023'\n",
      " 'SRR14010939' 'SRR14010986' 'SRR14011021' 'SRR14026521' 'SRR14010941'\n",
      " 'SRR14011011' 'SRR14010937' 'SRR14010969' 'SRR14010982' 'SRR14011031'\n",
      " 'SRR14011036' 'SRR14010966' 'SRR14026546' 'SRR14010989' 'SRR14010948'\n",
      " 'SRR14010933' 'SRR14026523' 'SRR14011027' 'SRR14011028' 'SRR14026529'\n",
      " 'SRR14026554' 'SRR14010998' 'SRR14026553' 'SRR14022764' 'SRR13726582'\n",
      " 'SRR14011000' 'SRR14011013' 'SRR14010965' 'SRR14026516' 'SRR14010958'\n",
      " 'SRR14010988' 'SRR14011032' 'SRR14011020' 'SRR14026555' 'SRR14011005'\n",
      " 'SRR14011008' 'SRR14010955' 'SRR13999992' 'SRR14026551' 'SRR14026515'\n",
      " 'SRR13726585' 'SRR14011017' 'SRR14022783' 'SRR14010973' 'SRR14022737'\n",
      " 'SRR13727011' 'SRR14026517' 'SRR14026453' 'SRR14022769' 'SRR13712372'\n",
      " 'SRR13726554' 'SRR13999988' 'SRR13999975' 'SRR14024954' 'SRR13726528'\n",
      " 'SRR14024964' 'SRR14022780' 'SRR14024985' 'SRR13999911' 'SRR14024969'\n",
      " 'SRR14022779' 'SRR13999978' 'SRR14022763' 'SRR14000019' 'SRR14024984'\n",
      " 'SRR14025000' 'SRR14024976' 'SRR14026543' 'SRR13999938' 'SRR13726571'\n",
      " 'SRR14026541' 'SRR14024986' 'SRR13999935' 'SRR14022776' 'SRR14026542'\n",
      " 'SRR13726529' 'SRR14026447' 'SRR14000010' 'SRR14024989' 'SRR14022738'\n",
      " 'SRR13999958' 'SRR14022735' 'SRR14026528' 'SRR14000003' 'SRR14026477'\n",
      " 'SRR14024974' 'SRR14022772' 'SRR13725699' 'SRR14022759' 'SRR14022771'\n",
      " 'SRR14022773' 'SRR13999918' 'SRR13725722' 'SRR14024960' 'SRR14026467'\n",
      " 'SRR14000017' 'SRR14022781' 'SRR13999987' 'SRR13726507' 'SRR14026502'\n",
      " 'SRR14026442' 'SRR14024956' 'SRR13726581' 'SRR13726587' 'SRR14026465'\n",
      " 'SRR14022768' 'SRR14024990' 'SRR14024949' 'SRR14000595' 'SRR13726561'\n",
      " 'SRR14024950' 'SRR14026511' 'SRR13712511' 'SRR14000024' 'SRR13726556'\n",
      " 'SRR14024962' 'SRR14022778' 'SRR14000614' 'SRR13727000' 'SRR14026479'\n",
      " 'SRR14026496' 'SRR14000606' 'SRR14026490' 'SRR14026485' 'SRR14026450'\n",
      " 'SRR14024981' 'SRR14022782' 'SRR14025002' 'SRR14022740' 'SRR14026475'\n",
      " 'SRR13999912' 'SRR13999995' 'SRR14024957' 'SRR14024959' 'SRR14022749'\n",
      " 'SRR14024970' 'SRR13999983' 'SRR14026503' 'SRR14026455' 'SRR13726539'\n",
      " 'SRR14000012' 'SRR14026461' 'SRR13999984' 'SRR13999917' 'SRR13726573'\n",
      " 'SRR14022766' 'SRR14024972' 'SRR14024963' 'SRR13725706' 'SRR14026466'\n",
      " 'SRR14022777' 'SRR14024983' 'SRR14022757' 'SRR13999954' 'SRR13726510'\n",
      " 'SRR14024996' 'SRR14026492' 'SRR14026460' 'SRR13726549' 'SRR13725695'\n",
      " 'SRR14024958' 'SRR14026449' 'SRR13727010' 'SRR14022745' 'SRR14024978'\n",
      " 'SRR13712365' 'SRR13712517' 'SRR14026494' 'SRR13726541' 'SRR14024952'\n",
      " 'SRR14022746' 'SRR14022762' 'SRR14022770' 'SRR14026497' 'SRR13727018'\n",
      " 'SRR14026452' 'SRR14026547' 'SRR14026524' 'SRR13726518' 'SRR14000594'\n",
      " 'SRR14026504' 'SRR14026473' 'SRR14026533' 'SRR13999939' 'SRR13999998'\n",
      " 'SRR14022747' 'SRR13727023' 'SRR14024988' 'SRR14026544' 'SRR13999932'\n",
      " 'SRR14022739' 'SRR14026483' 'SRR14026454' 'SRR14026457' 'SRR14026532'\n",
      " 'SRR13726547' 'SRR14022744' 'SRR13726512' 'SRR13726544' 'SRR13725700'\n",
      " 'SRR14026462' 'SRR13712368' 'SRR13999936' 'SRR14026456' 'SRR13726509'\n",
      " 'SRR14000585' 'SRR13727004' 'SRR14026526' 'SRR14022743' 'SRR13999971'\n",
      " 'SRR13725711' 'SRR14022775' 'SRR13999996' 'SRR14026480' 'SRR14022752'\n",
      " 'SRR14024973' 'SRR14026444' 'SRR13712361' 'SRR14026464' 'SRR14000593'\n",
      " 'SRR13712371' 'SRR13999953' 'SRR14022761' 'SRR13726526' 'SRR13999931'\n",
      " 'SRR13726591' 'SRR14026482' 'SRR14026495' 'SRR13999930' 'SRR13712520'\n",
      " 'SRR14026451' 'SRR14026527' 'SRR13726552' 'SRR13726540' 'SRR13726514'\n",
      " 'SRR13726548' 'SRR13999969' 'SRR13726589' 'SRR13712375' 'SRR14022742'\n",
      " 'SRR13725709' 'SRR13726534' 'SRR14026469' 'SRR13999989' 'SRR13726546'\n",
      " 'SRR14026522' 'SRR14026470' 'SRR14026549' 'SRR13712378' 'SRR13999929'\n",
      " 'SRR14024975' 'SRR14000587' 'SRR13727021' 'SRR14026463' 'SRR13725710'\n",
      " 'SRR14000025' 'SRR13999937' 'SRR14026506' 'SRR13999919' 'SRR14000000'\n",
      " 'SRR14024993' 'SRR14026445' 'SRR14026448' 'SRR13725687' 'SRR14000004'\n",
      " 'SRR14026484' 'SRR13712492' 'SRR13725730' 'SRR13725707' 'SRR13999942'\n",
      " 'SRR14026493' 'SRR13712503' 'SRR13725696' 'SRR13725734' 'SRR13999921'\n",
      " 'SRR13999985' 'SRR14026509' 'SRR13725694' 'SRR14026459' 'SRR13725688'\n",
      " 'SRR13726550' 'SRR13712494' 'SRR14026520' 'SRR14024948' 'SRR14022754'\n",
      " 'SRR13999986' 'SRR14022767' 'SRR13712388' 'SRR14024998' 'SRR13999948'\n",
      " 'SRR13712385' 'SRR14026468' 'SRR13999997' 'SRR13727002' 'SRR13999951'\n",
      " 'SRR14000590' 'SRR13727019' 'SRR14026486' 'SRR13726588' 'SRR13727035'\n",
      " 'SRR13726521' 'SRR13999927' 'SRR14026498' 'SRR14024994' 'SRR13999967'\n",
      " 'SRR13727029' 'SRR14024953' 'SRR14024991' 'SRR14022765' 'SRR13726506'\n",
      " 'SRR13712374' 'SRR14022753' 'SRR13999979' 'SRR14026471' 'SRR14024961'\n",
      " 'SRR14026446' 'SRR14026458' 'SRR13725715' 'SRR14026491' 'SRR13712381'\n",
      " 'SRR13725717' 'SRR14024966' 'SRR14026478' 'SRR13727001' 'SRR14022751'\n",
      " 'SRR13726532' 'SRR14026505' 'SRR14025001' 'SRR13712497' 'SRR14026481'\n",
      " 'SRR13999999' 'SRR13999974' 'SRR13712362' 'SRR14024995' 'SRR13725728'\n",
      " 'SRR14000607' 'SRR13726594' 'SRR13726520' 'SRR14022750' 'SRR13712504'\n",
      " 'SRR13726576' 'SRR14000011' 'SRR14000598' 'SRR13712382' 'SRR13726593'\n",
      " 'SRR13726517' 'SRR14000007' 'SRR13712391' 'SRR13726536' 'SRR14000026'\n",
      " 'SRR14026488' 'SRR14026472' 'SRR13999962' 'SRR13727034' 'SRR13712383'\n",
      " 'SRR13726555' 'SRR14024980' 'SRR14022741' 'SRR13712392' 'SRR13726578'\n",
      " 'SRR13999970' 'SRR13726530' 'SRR14026501' 'SRR14024999' 'SRR13725713'\n",
      " 'SRR14000022' 'SRR13999913' 'SRR14026500' 'SRR13727013' 'SRR13725732'\n",
      " 'SRR13999990' 'SRR14024971' 'SRR14022774' 'SRR13726527' 'SRR14000029'\n",
      " 'SRR13726524' 'SRR13726505' 'SRR14000610' 'SRR13727033' 'SRR13999922'\n",
      " 'SRR13727032' 'SRR13712512' 'SRR13726537' 'SRR13725731' 'SRR13727003'\n",
      " 'SRR14022760' 'SRR14024979' 'SRR13725718' 'SRR13999940' 'SRR14000608'\n",
      " 'SRR14022755' 'SRR13999994' 'SRR13725703' 'SRR13999934' 'SRR13726569'\n",
      " 'SRR13726515' 'SRR14000006' 'SRR14000028' 'SRR14022736' 'SRR13726523'\n",
      " 'SRR14026440' 'SRR13999914' 'SRR13725714' 'SRR13726516' 'SRR13726568'\n",
      " 'SRR13712370' 'SRR13712364' 'SRR13999924' 'SRR14000021' 'SRR13727017'\n",
      " 'SRR13727030' 'SRR14000602' 'SRR13725704' 'SRR13726564' 'SRR13726559'\n",
      " 'SRR13726543' 'SRR13999915' 'SRR13726503' 'SRR13726511' 'SRR14026476'\n",
      " 'SRR13727012' 'SRR13725698' 'SRR13726508' 'SRR13726560' 'SRR13999950'\n",
      " 'SRR14000002' 'SRR14026487' 'SRR14026499' 'SRR13999941' 'SRR13712390'\n",
      " 'SRR13726565' 'SRR13726579' 'SRR14000592' 'SRR13712522' 'SRR13999963'\n",
      " 'SRR13725723' 'SRR13712366' 'SRR13999925' 'SRR14000588' 'SRR13999947'\n",
      " 'SRR13999946' 'SRR13725720' 'SRR14000601' 'SRR13712376' 'SRR13727024'\n",
      " 'SRR14026508' 'SRR13999981' 'SRR13999956' 'SRR13725691' 'SRR13726545'\n",
      " 'SRR13712525' 'SRR13726533' 'SRR13712369' 'SRR13712518' 'SRR13726553'\n",
      " 'SRR13999916' 'SRR14000599' 'SRR13999965' 'SRR13712387' 'SRR14000612'\n",
      " 'SRR13712367' 'SRR13727022' 'SRR14000609' 'SRR14000001' 'SRR13999959'\n",
      " 'SRR14026489' 'SRR13727026' 'SRR13712380' 'SRR14000605' 'SRR13999968'\n",
      " 'SRR14000591' 'SRR13999991' 'SRR13712379' 'SRR14026512' 'SRR13999960'\n",
      " 'SRR13999993' 'SRR14000613' 'SRR14024967' 'SRR14022734' 'SRR14000597'\n",
      " 'SRR13725701' 'SRR14026513' 'SRR14000611' 'SRR13712384' 'SRR13727028'\n",
      " 'SRR14000600' 'SRR13712373' 'SRR14000604' 'SRR13999945' 'SRR13999943'\n",
      " 'SRR14026443' 'SRR14022758' 'SRR13999961' 'SRR13726563' 'SRR14000016'\n",
      " 'SRR13726504' 'SRR13726513' 'SRR13999920' 'SRR14000589' 'SRR13726586'\n",
      " 'SRR14026507' 'SRR14026548' 'SRR13727015' 'SRR13725686' 'SRR14026474'\n",
      " 'SRR14000008' 'SRR13725689' 'SRR13999964' 'SRR13727014' 'SRR13726535'\n",
      " 'SRR13999980' 'SRR13726566' 'SRR13999957' 'SRR13727027' 'SRR13712377'\n",
      " 'SRR13712389' 'SRR14000023' 'SRR13727009' 'SRR13726525' 'SRR14000586'\n",
      " 'SRR13727025' 'SRR13725735' 'SRR13999928' 'SRR14000018' 'SRR14022756'\n",
      " 'SRR14000027' 'SRR14025003' 'SRR13999977' 'SRR14000013' 'SRR13712386'\n",
      " 'SRR13726542' 'SRR14000015' 'SRR14000596' 'SRR14000603' 'SRR13727008'\n",
      " 'SRR13727005' 'SRR14022748' 'SRR13727031' 'SRR13727020' 'SRR13725697'\n",
      " 'SRR13726538' 'SRR13712363' 'SRR13725726' 'SRR13726577' 'SRR13999923'\n",
      " 'SRR13999972' 'SRR13726575' 'SRR13725716' 'SRR13999933' 'SRR13726580'\n",
      " 'SRR14000020' 'SRR14000005' 'SRR13726574' 'SRR13727006' 'SRR13999944'\n",
      " 'SRR13999926' 'SRR13725693']\n",
      "AA215\n",
      "[0. 1.]\n",
      "AA366\n",
      "[0. 1.]\n",
      "AA769\n",
      "[0. 1.]\n",
      "AA890\n",
      "[0. 1.]\n",
      "AA891\n",
      "[0. 1.]\n",
      "AA892\n",
      "[0. 1.]\n",
      "AA893\n",
      "[0. 1.]\n",
      "AA894\n",
      "[0. 1.]\n",
      "AA896\n",
      "[0. 1.]\n",
      "AB020\n",
      "[0. 1.]\n",
      "AB117\n",
      "[0. 1.]\n",
      "AB171\n",
      "[0. 1.]\n",
      "AB172\n",
      "[0. 1.]\n",
      "AB173\n",
      "[0. 1.]\n",
      "AB174\n",
      "[0. 1.]\n",
      "AB369\n",
      "[0. 1.]\n",
      "AB527\n",
      "[0. 1.]\n",
      "AB528\n",
      "[0. 1.]\n",
      "AB529\n",
      "[0. 1.]\n",
      "AB530\n",
      "[1. 0.]\n",
      "AB614\n",
      "[0. 1.]\n",
      "AB615\n",
      "[0. 1.]\n",
      "AB616\n",
      "[0. 1.]\n",
      "AB617\n",
      "[0. 1.]\n",
      "AB642\n",
      "[0. 1.]\n",
      "AB756\n",
      "[0. 1.]\n",
      "AB758\n",
      "[0. 1.]\n",
      "AB759\n",
      "[0. 1.]\n",
      "AB760\n",
      "[0. 1.]\n",
      "AB915\n",
      "[1. 0.]\n",
      "AB917\n",
      "[0. 1.]\n",
      "AB918\n",
      "[0. 1.]\n",
      "AB920\n",
      "[0. 1.]\n",
      "AB922\n",
      "[0. 1.]\n",
      "AB973\n",
      "[0. 1.]\n",
      "AB976\n",
      "[0. 1.]\n",
      "AB977\n",
      "[0. 1.]\n",
      "AC345\n",
      "[0. 1.]\n",
      "AC468\n",
      "[0. 1.]\n",
      "AC534\n",
      "[0. 1.]\n",
      "AC535\n",
      "[0. 1.]\n",
      "AC536\n",
      "[0. 1.]\n",
      "AC537\n",
      "[0. 1.]\n",
      "AC544\n",
      "[0. 1.]\n",
      "AC607\n",
      "[0. 1.]\n",
      "AC630\n",
      "[0. 1.]\n",
      "AC631\n",
      "[0. 1.]\n",
      "AC670\n",
      "[0. 1.]\n",
      "AC726\n",
      "[0. 1.]\n",
      "AC727\n",
      "[0. 1.]\n",
      "AC728\n",
      "[0. 1.]\n",
      "AC729\n",
      "[0. 1.]\n",
      "AC731\n",
      "[0. 1.]\n",
      "AC732\n",
      "[0. 1.]\n",
      "AC733\n",
      "[0. 1.]\n",
      "AC751\n",
      "[0. 1.]\n",
      "AC753\n",
      "[0. 1.]\n",
      "AC754\n",
      "[0. 1.]\n",
      "AC833\n",
      "[0. 1.]\n",
      "AD055\n",
      "[0. 1.]\n",
      "AD058\n",
      "[0. 1.]\n",
      "AD059\n",
      "[0. 1.]\n",
      "AD100\n",
      "[0. 1.]\n",
      "AD156\n",
      "[0. 1.]\n",
      "AD265\n",
      "[0. 1.]\n",
      "AD268\n",
      "[0. 1.]\n",
      "AD269\n",
      "[0. 1.]\n",
      "AD288\n",
      "[0. 1.]\n",
      "AD296\n",
      "[0. 1.]\n",
      "AD297\n",
      "[0. 1.]\n",
      "AD414\n",
      "[0. 1.]\n",
      "AD415\n",
      "[0. 1.]\n",
      "AD569\n",
      "[0. 1.]\n",
      "AD582\n",
      "[0. 1.]\n",
      "AD709\n",
      "[0. 1.]\n",
      "AD710\n",
      "[0. 1.]\n",
      "AD906\n",
      "[0. 1.]\n",
      "AD907\n",
      "[0. 1.]\n",
      "AD908\n",
      "[0. 1.]\n",
      "AD909\n",
      "[0. 1.]\n",
      "AD910\n",
      "[0. 1.]\n",
      "AE309\n",
      "[0. 1.]\n",
      "AE310\n",
      "[0. 1.]\n",
      "AE311\n",
      "[0. 1.]\n",
      "AE312\n",
      "[1. 0.]\n",
      "AE313\n",
      "[0. 1.]\n",
      "AE314\n",
      "[0. 1.]\n",
      "AE315\n",
      "[0. 1.]\n",
      "AE577\n",
      "[0. 1.]\n",
      "AE633\n",
      "[0. 1.]\n",
      "AE672\n",
      "[0. 1.]\n",
      "AE807\n",
      "[0. 1.]\n",
      "AF568\n",
      "[0. 1.]\n",
      "AF632\n",
      "[0. 1.]\n",
      "AF662\n",
      "[0. 1.]\n",
      "AF663\n",
      "[0. 1.]\n",
      "AF717\n",
      "[0. 1.]\n",
      "AF761\n",
      "[0. 1.]\n",
      "AG002\n",
      "[0. 1.]\n",
      "AG003\n",
      "[0. 1.]\n",
      "AG184\n",
      "[0. 1.]\n",
      "AG970\n",
      "[0. 1.]\n",
      "AH188\n",
      "[0. 1.]\n",
      "AH273\n",
      "[0. 1.]\n",
      "novel_1a033aeec961423a98d1e337f28b31b5\n",
      "[0. 1.]\n",
      "novel_3c59533158572f3977e5c5e69c597db0\n",
      "[0. 1.]\n",
      "novel_6ecbc972f5351ab231e301f96a4b8ad4\n",
      "[0. 1.]\n",
      "novel_9198ae084b830436dc78b2c36a55d225\n",
      "[0. 1.]\n",
      "Species\n",
      "['Enterococcus faecalis' 'Enterococcus faecium']\n",
      "Ampicillin\n",
      "['S' 'R']\n",
      "Vancomycin\n",
      "['S' 'R' 'I' 'S ']\n",
      "Teicoplanin\n",
      "['S' 'I' 'R' 'ND' nan]\n",
      "Doxycycline\n",
      "['I' 'S' 'R']\n",
      "Erythromycin\n",
      "['R' 'I' 'S']\n",
      "Nitrofurantoin\n",
      "['S' 'R' 'I']\n",
      "Gentamicin\n",
      "['S' 'R' 'I']\n",
      "Linezolid\n",
      "['S' 'I' 'R']\n",
      "Levofloxacin\n",
      "['S' 'R' 'I' nan]\n",
      "Quin\n",
      "['R' 'I' 'S' nan]\n",
      "Streptomycin\n",
      "['S' 'I' 'R' nan]\n",
      "Tigecycline\n",
      "['S' 'R' nan]\n"
     ]
    }
   ],
   "source": [
    "for column in prim_xy_pre_copy:\n",
    "    print(column)\n",
    "    print(prim_xy_pre_copy[column].unique())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "id": "8a5c63e7",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Run_accession</th>\n",
       "      <th>AA215</th>\n",
       "      <th>AA366</th>\n",
       "      <th>AA769</th>\n",
       "      <th>AA890</th>\n",
       "      <th>AA891</th>\n",
       "      <th>AA892</th>\n",
       "      <th>AA893</th>\n",
       "      <th>AA894</th>\n",
       "      <th>AA896</th>\n",
       "      <th>...</th>\n",
       "      <th>Teicoplanin</th>\n",
       "      <th>Doxycycline</th>\n",
       "      <th>Erythromycin</th>\n",
       "      <th>Nitrofurantoin</th>\n",
       "      <th>Gentamicin</th>\n",
       "      <th>Linezolid</th>\n",
       "      <th>Levofloxacin</th>\n",
       "      <th>Quin</th>\n",
       "      <th>Streptomycin</th>\n",
       "      <th>Tigecycline</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>SRR14000009</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>SRR13999966</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>SRR14026545</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>SRR14010950</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>SRR14011034</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>R</td>\n",
       "      <td>R</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>642</th>\n",
       "      <td>SRR13726574</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>643</th>\n",
       "      <td>SRR13727006</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>644</th>\n",
       "      <td>SRR13999944</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>645</th>\n",
       "      <td>SRR13999926</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>646</th>\n",
       "      <td>SRR13725693</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>...</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>S</td>\n",
       "      <td>R</td>\n",
       "      <td>I</td>\n",
       "      <td>S</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>647 rows × 122 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "    Run_accession  AA215  AA366  AA769  AA890  AA891  AA892  AA893  AA894  \\\n",
       "0     SRR14000009    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "1     SRR13999966    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "2     SRR14026545    0.0    0.0    0.0    1.0    1.0    0.0    0.0    0.0   \n",
       "3     SRR14010950    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "4     SRR14011034    0.0    0.0    0.0    1.0    0.0    0.0    1.0    0.0   \n",
       "..            ...    ...    ...    ...    ...    ...    ...    ...    ...   \n",
       "642   SRR13726574    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "643   SRR13727006    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "644   SRR13999944    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "645   SRR13999926    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "646   SRR13725693    0.0    0.0    0.0    0.0    0.0    0.0    0.0    0.0   \n",
       "\n",
       "     AA896  ...  Teicoplanin  Doxycycline  Erythromycin  Nitrofurantoin  \\\n",
       "0      0.0  ...            S            I             R               S   \n",
       "1      0.0  ...            S            S             I               S   \n",
       "2      0.0  ...            S            S             S               S   \n",
       "3      0.0  ...            I            S             R               S   \n",
       "4      0.0  ...            R            R             R               S   \n",
       "..     ...  ...          ...          ...           ...             ...   \n",
       "642    0.0  ...            S            R             S               S   \n",
       "643    0.0  ...            S            S             I               S   \n",
       "644    0.0  ...            S            R             I               S   \n",
       "645    0.0  ...            S            R             I               S   \n",
       "646    0.0  ...            S            S             I               S   \n",
       "\n",
       "     Gentamicin  Linezolid  Levofloxacin  Quin  Streptomycin  Tigecycline  \n",
       "0             S          S             S     R             S            S  \n",
       "1             S          S             S     I             S            S  \n",
       "2             R          S             R     R             S            S  \n",
       "3             S          S             R     S             S            S  \n",
       "4             S          S             R     S             I            S  \n",
       "..          ...        ...           ...   ...           ...          ...  \n",
       "642           S          S             S     R             S            S  \n",
       "643           S          S             S     R             S            S  \n",
       "644           S          S             S     R             S            S  \n",
       "645           S          S             S     I             S            S  \n",
       "646           S          R             S     R             I            S  \n",
       "\n",
       "[647 rows x 122 columns]"
      ]
     },
     "execution_count": 17,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "prim_xy_pre_copy"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "id": "ccd067c4",
   "metadata": {},
   "outputs": [],
   "source": [
    "prim_binary_Xy_Vancomycin = prim_xy_pre_copy[prim_xy_pre_copy['Vancomycin'].isin(['R','S','S '])].replace(['S'], 0).replace(['S '], 0).replace(['R'],1).set_index('Run_accession')\n",
    "prim_binary_Xy_Doxycycline = prim_xy_pre_copy[prim_xy_pre_copy['Doxycycline'].isin(['R','S'])].replace(['S'], 0).replace(['R'],1).set_index('Run_accession')\n",
    "prim_binary_Xy_Erythromycin = prim_xy_pre_copy[prim_xy_pre_copy['Erythromycin'].isin(['R','S'])].replace(['S'], 0).replace(['R'],1).set_index('Run_accession')"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "dd9bff76",
   "metadata": {},
   "source": [
    "#### Functions"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "id": "beeb7b3c",
   "metadata": {
    "code_folding": [
     1
    ]
   },
   "outputs": [],
   "source": [
    "rf_clf = RandomForestClassifier(criterion = 'gini', n_estimators = 100)\n",
    "gb_clf = GradientBoostingClassifier(n_estimators = 100, max_features = 'auto', criterion = 'friedman_mse', \n",
    "                                     loss = 'exponential', learning_rate = 0.1)\n",
    "lr_clf = LogisticRegression(penalty='l2',solver='lbfgs')\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "id": "c3cdbbdd",
   "metadata": {},
   "outputs": [],
   "source": [
    "def ML_model(X, y, clf):\n",
    "    \n",
    "    ###############################################\n",
    "    #Get feature names first:\n",
    "    features=[]\n",
    "    for columns in X.columns:\n",
    "        features.append(columns)\n",
    "    ###############################################\n",
    "    \n",
    "    #init a kfold object. I like to call it \"skf\".\n",
    "    skf = StratifiedKFold(n_splits=5, shuffle=True, random_state=42)\n",
    "\n",
    "    prediction_outcome_ls = []\n",
    "    \n",
    "    #So that we can plot again, we'll make a nice data structure for our results.\n",
    "    records = []\n",
    "    confusion_matrices = []\n",
    "    \n",
    "    tree_feat_ls = []\n",
    "    lr_feat_ls = []\n",
    "    \n",
    "    #Now we can loop.\n",
    "    #looping on the skf.split() provides train/test indices.\n",
    "    for train_index, test_index in skf.split(X.values,y.values):\n",
    "        clf.fit(X.values[train_index], y.values[train_index])\n",
    "        \n",
    "        ###############################################\n",
    "        #figure out the feature importance \n",
    "        if clf != lr_clf:\n",
    "            tree_model = clf.fit(X.values[train_index], y.values[train_index])\n",
    "            tree_imp_features = tree_model.feature_importances_\n",
    "            df_imp_features = pd.DataFrame({\"features\":features}).join(pd.DataFrame({\"weights\":tree_imp_features}))\n",
    "            df_imp_features_final = df_imp_features.sort_values(by=['weights'], ascending=False)\n",
    "            df_imp_features_final['Antibiotic'] = y.columns[0]\n",
    "            display(df_imp_features_final)\n",
    "            tree_feat_ls.append(df_imp_features_final)\n",
    "        \n",
    "        else:\n",
    "            lr_model = clf.fit(X.values[train_index], y.values[train_index])\n",
    "            lr_coef = lr_model.coef_[0]\n",
    "            column_ls = X.columns.to_list()\n",
    "            d = {'Features': column_ls, 'lr_coef': lr_coef, 'Antibiotic':y.columns[0]}\n",
    "            lr_coef_df = pd.DataFrame(data=d).sort_values(by='lr_coef',ascending=False)\n",
    "            lr_feat_ls.append(lr_coef_df)\n",
    "        ###############################################\n",
    "        \n",
    "                \n",
    "        y_true_index = y.index[test_index]\n",
    "        y_true = y.values[test_index]\n",
    "        y_pred = clf.predict(X.values[test_index]) #get the predicted labels of the test set.\n",
    "        \n",
    "        y_true_index_ls = pd.DataFrame(y_true_index.to_list())\n",
    "        y_true_df = pd.DataFrame(y_true)\n",
    "        y_pred_df = pd.DataFrame(y_pred)\n",
    "\n",
    "        #concatenating the two dataframes\n",
    "        y_lists = [y_true_index_ls, y_true_df, y_pred_df]\n",
    "        df_y_outcomes = pd.concat(y_lists, axis=1)\n",
    "        df_y_outcomes.columns = ['GenomeID','y_true','y_pred']\n",
    "        df_y_outcomes\n",
    "\n",
    "        prediction_outcome_ls.append(df_y_outcomes)\n",
    "\n",
    "  \n",
    "   \n",
    "        #We calculate our metrics individually now. \n",
    "        accuracy = metrics.accuracy_score(y_true, y_pred)\n",
    "        f1 = metrics.f1_score(y_true, y_pred, average='weighted') #F1 behaves different for binary classification problems! be careful\n",
    "        precision = metrics.precision_score(y_true, y_pred, average='weighted')\n",
    "        recall = metrics.recall_score(y_true, y_pred, average='weighted')\n",
    "\n",
    "        cm = metrics.confusion_matrix(y_true, y_pred) # pass your labels here if you want them.\n",
    "\n",
    "        #Keeping the scores as a list of dicts that all have the same keys lets us do some nice pandas stuff.\n",
    "        records.append({'Accuracy': accuracy,\n",
    "                        'F1': f1,\n",
    "                        'Precision': precision,\n",
    "                        'Recall': recall})\n",
    "\n",
    "        confusion_matrices.append(cm)\n",
    "\n",
    "    #Now we can get our data summary.\n",
    "\n",
    "    #metrics is the same as before.\n",
    "    df = pd.DataFrame.from_records(records)\n",
    "    #Now we can sum our confusion matrix too.\n",
    "    cm = np.asarray(confusion_matrices).sum(axis=0)\n",
    "\n",
    "    prediction_outcome = pd.concat([prediction_outcome_ls[0], prediction_outcome_ls[1], prediction_outcome_ls[2],\n",
    "                                   prediction_outcome_ls[3], prediction_outcome_ls[4]], axis=0).set_index('GenomeID')\n",
    "    \n",
    "    misclassified = prediction_outcome[prediction_outcome.apply(lambda x: x['y_true'] != x['y_pred'], axis = 1)].index\n",
    "    \n",
    "    print('{antibiotic} resistance prediction,'.format(antibiotic=y.columns[0]))\n",
    "    print(df)\n",
    "    print()\n",
    "    print(\"The misclassified isolates for {ab} resistance prediction is stated in a below list:\".format(ab=y.columns[0]))\n",
    "    print(misclassified)   \n",
    "#     for col in df.columns:\n",
    "#         metric_name = col#.split('test_')[1]\n",
    "#         print(\"=\"*40)\n",
    "#         #print each metric average and standard deviation to three decimal places.\n",
    "#         print(\"{0}: {1:.3f} +/- {2:.3f}\".format(metric_name, df[col].mean(), df[col].std()))\n",
    "    \n",
    "    \n",
    "    return df, tree_feat_ls if len(lr_feat_ls)==0 else lr_feat_ls, misclassified\n",
    "            #[0] = the dataframe , [1] = feature list, [2] = clf.ft... (the trained model!), [3] = misclassified\n",
    "\n",
    "\n",
    "def true_pred(X,y,clf):\n",
    "    \n",
    "    #init a kfold object. I like to call it \"skf\".\n",
    "    skf = StratifiedKFold(n_splits=5, shuffle=True, random_state=42)\n",
    "\n",
    "    prediction_outcome_ls = []\n",
    "    #Now we can loop.\n",
    "    #looping on the skf.split() provides train/test indices.\n",
    "    for train_index, test_index in skf.split(X.values,y.values):\n",
    "        clf.fit(X.values[train_index], y.values[train_index])\n",
    "\n",
    "        y_true_index = y.index[test_index]\n",
    "        y_true = y.values[test_index]\n",
    "        y_pred = clf.predict(X.values[test_index]) #get the predicted labels of the test set.\n",
    "\n",
    "        y_true_index_ls = pd.DataFrame(y_true_index.to_list())\n",
    "        y_true_df = pd.DataFrame(y_true)\n",
    "        y_pred_df = pd.DataFrame(y_pred)\n",
    "\n",
    "        #concatenating the two dataframes\n",
    "        y_lists = [y_true_index_ls, y_true_df, y_pred_df]\n",
    "        df_y_outcomes = pd.concat(y_lists, axis=1)\n",
    "        df_y_outcomes.columns = ['GenomeID','y_true','y_pred']\n",
    "        df_y_outcomes\n",
    "\n",
    "        prediction_outcome_ls.append(df_y_outcomes)\n",
    "\n",
    "  \n",
    "    prediction_outcome = pd.concat([prediction_outcome_ls[0], prediction_outcome_ls[1], prediction_outcome_ls[2],\n",
    "                                   prediction_outcome_ls[3], prediction_outcome_ls[4]], axis=0).set_index('GenomeID')\n",
    "    \n",
    "    print(\"The misclassified isolates for {ab} resistance prediction is stated in a below list:\".format(ab=y.columns[0]))\n",
    "    misclassified = prediction_outcome[prediction_outcome.apply(lambda x: x['y_true'] != x['y_pred'], axis = 1)].index\n",
    "    print(misclassified)\n",
    "    print()\n",
    "    print()\n",
    "    print(\"The prediction and true labels for {ab} is:\".format(ab=y.columns[0]))\n",
    "    return prediction_outcome\n",
    "    "
   ]
  },
  {
   "cell_type": "markdown",
   "id": "a43210fb",
   "metadata": {},
   "source": [
    "#### ML analysis"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "id": "89d6361b",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n"
     ]
    },
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>features</th>\n",
       "      <th>weights</th>\n",
       "      <th>Antibiotic</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>54</th>\n",
       "      <td>AC733</td>\n",
       "      <td>0.547611</td>\n",
       "      <td>Vancomycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>88</th>\n",
       "      <td>AE577</td>\n",
       "      <td>0.205818</td>\n",
       "      <td>Vancomycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>90</th>\n",
       "      <td>AE672</td>\n",
       "      <td>0.045353</td>\n",
       "      <td>Vancomycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>AB173</td>\n",
       "      <td>0.043538</td>\n",
       "      <td>Vancomycin</td>\n",
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       "      <th>28</th>\n",
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       "      <th>51</th>\n",
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       "                                   features   weights  Antibiotic\n",
       "54                                    AC733  0.547611  Vancomycin\n",
       "88                                    AE577  0.205818  Vancomycin\n",
       "90                                    AE672  0.045353  Vancomycin\n",
       "13                                    AB173  0.043538  Vancomycin\n",
       "28                                    AB760  0.042600  Vancomycin\n",
       "..                                      ...       ...         ...\n",
       "1                                     AA366  0.000000  Vancomycin\n",
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       "50                                    AC728  0.000000  Vancomycin\n",
       "48                                    AC726  0.000000  Vancomycin\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
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       "                                   features   weights  Antibiotic\n",
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       "13                                    AB173  0.116347  Vancomycin\n",
       "28                                    AB760  0.062703  Vancomycin\n",
       "6                                     AA893  0.023450  Vancomycin\n",
       "..                                      ...       ...         ...\n",
       "1                                     AA366  0.000000  Vancomycin\n",
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       "46                                    AC631  0.000000  Vancomycin\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Vancomycin\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
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       "13                                    AB173  0.098352  Vancomycin\n",
       "28                                    AB760  0.042587  Vancomycin\n",
       "6                                     AA893  0.034325  Vancomycin\n",
       "..                                      ...       ...         ...\n",
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       "50                                    AC728  0.000000  Vancomycin\n",
       "48                                    AC726  0.000000  Vancomycin\n",
       "46                                    AC631  0.000000  Vancomycin\n",
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       "\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
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       "                                   features   weights  Antibiotic\n",
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       "88                                    AE577  0.108313  Vancomycin\n",
       "28                                    AB760  0.072531  Vancomycin\n",
       "23                                    AB617  0.034970  Vancomycin\n",
       "..                                      ...       ...         ...\n",
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       "44                                    AC607  0.000000  Vancomycin\n",
       "43                                    AC544  0.000000  Vancomycin\n",
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       "\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
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       "                                   features   weights  Antibiotic\n",
       "54                                    AC733  0.657284  Vancomycin\n",
       "53                                    AC732  0.100276  Vancomycin\n",
       "88                                    AE577  0.045668  Vancomycin\n",
       "20                                    AB614  0.039171  Vancomycin\n",
       "13                                    AB173  0.038231  Vancomycin\n",
       "..                                      ...       ...         ...\n",
       "66                                    AD269  0.000000  Vancomycin\n",
       "68                                    AD296  0.000000  Vancomycin\n",
       "69                                    AD297  0.000000  Vancomycin\n",
       "70                                    AD414  0.000000  Vancomycin\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Vancomycin\n",
       "\n",
       "[108 rows x 3 columns]"
      ]
     },
     "metadata": {},
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    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Vancomycin resistance prediction,\n",
      "   Accuracy        F1  Precision    Recall\n",
      "0  0.950820  0.948560   0.950317  0.950820\n",
      "1  0.975410  0.976044   0.978484  0.975410\n",
      "2  0.983607  0.983897   0.985032  0.983607\n",
      "3  0.958678  0.958250   0.958051  0.958678\n",
      "4  0.950413  0.950413   0.950413  0.950413\n",
      "\n",
      "The misclassified isolates for Vancomycin resistance prediction is stated in a below list:\n",
      "Index(['SRR14010961', 'SRR14010945', 'SRR14011027', 'SRR14010955',\n",
      "       'SRR14022769', 'SRR14000612', 'SRR14026521', 'SRR14026523',\n",
      "       'SRR14011017', 'SRR14026519', 'SRR14026554', 'SRR14010949',\n",
      "       'SRR14026552', 'SRR14011012', 'SRR14010952', 'SRR14026490',\n",
      "       'SRR14010969', 'SRR14010998', 'SRR14010988', 'SRR14026555',\n",
      "       'SRR14026517', 'SRR14000586'],\n",
      "      dtype='object', name='GenomeID')\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n"
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       "      <th>weights</th>\n",
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       "  <tbody>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>AB756</td>\n",
       "      <td>0.228461</td>\n",
       "      <td>Doxycycline</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>AB530</td>\n",
       "      <td>0.224424</td>\n",
       "      <td>Doxycycline</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>54</th>\n",
       "      <td>AC733</td>\n",
       "      <td>0.074967</td>\n",
       "      <td>Doxycycline</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>77</th>\n",
       "      <td>AD907</td>\n",
       "      <td>0.051403</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>84</th>\n",
       "      <td>AE312</td>\n",
       "      <td>0.046427</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>...</th>\n",
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       "      <td>...</td>\n",
       "      <td>...</td>\n",
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       "    <tr>\n",
       "      <th>64</th>\n",
       "      <td>AD265</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>66</th>\n",
       "      <td>AD269</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>69</th>\n",
       "      <td>AD297</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>70</th>\n",
       "      <td>AD414</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>107</th>\n",
       "      <td>novel_9198ae084b830436dc78b2c36a55d225</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "                                   features   weights   Antibiotic\n",
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       "19                                    AB530  0.224424  Doxycycline\n",
       "54                                    AC733  0.074967  Doxycycline\n",
       "77                                    AD907  0.051403  Doxycycline\n",
       "84                                    AE312  0.046427  Doxycycline\n",
       "..                                      ...       ...          ...\n",
       "64                                    AD265  0.000000  Doxycycline\n",
       "66                                    AD269  0.000000  Doxycycline\n",
       "69                                    AD297  0.000000  Doxycycline\n",
       "70                                    AD414  0.000000  Doxycycline\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Doxycycline\n",
       "\n",
       "[108 rows x 3 columns]"
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
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       "      <th>Antibiotic</th>\n",
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       "  <tbody>\n",
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       "      <th>25</th>\n",
       "      <td>AB756</td>\n",
       "      <td>0.233573</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>84</th>\n",
       "      <td>AE312</td>\n",
       "      <td>0.118095</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>77</th>\n",
       "      <td>AD907</td>\n",
       "      <td>0.080029</td>\n",
       "      <td>Doxycycline</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>AB530</td>\n",
       "      <td>0.066008</td>\n",
       "      <td>Doxycycline</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>88</th>\n",
       "      <td>AE577</td>\n",
       "      <td>0.061028</td>\n",
       "      <td>Doxycycline</td>\n",
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       "      <th>...</th>\n",
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       "      <td>...</td>\n",
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       "    <tr>\n",
       "      <th>68</th>\n",
       "      <td>AD296</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>69</th>\n",
       "      <td>AD297</td>\n",
       "      <td>0.000000</td>\n",
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       "    <tr>\n",
       "      <th>70</th>\n",
       "      <td>AD414</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>36</th>\n",
       "      <td>AB977</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>107</th>\n",
       "      <td>novel_9198ae084b830436dc78b2c36a55d225</td>\n",
       "      <td>0.000000</td>\n",
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       "                                   features   weights   Antibiotic\n",
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       "84                                    AE312  0.118095  Doxycycline\n",
       "77                                    AD907  0.080029  Doxycycline\n",
       "19                                    AB530  0.066008  Doxycycline\n",
       "88                                    AE577  0.061028  Doxycycline\n",
       "..                                      ...       ...          ...\n",
       "68                                    AD296  0.000000  Doxycycline\n",
       "69                                    AD297  0.000000  Doxycycline\n",
       "70                                    AD414  0.000000  Doxycycline\n",
       "36                                    AB977  0.000000  Doxycycline\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Doxycycline\n",
       "\n",
       "[108 rows x 3 columns]"
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n"
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       "  <tbody>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
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       "      <td>0.228143</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>84</th>\n",
       "      <td>AE312</td>\n",
       "      <td>0.137488</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>AB530</td>\n",
       "      <td>0.071639</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>54</th>\n",
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       "      <td>0.071626</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>90</th>\n",
       "      <td>AE672</td>\n",
       "      <td>0.051524</td>\n",
       "      <td>Doxycycline</td>\n",
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       "      <th>...</th>\n",
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       "      <td>...</td>\n",
       "      <td>...</td>\n",
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       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>AB529</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>66</th>\n",
       "      <td>AD269</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>69</th>\n",
       "      <td>AD297</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>70</th>\n",
       "      <td>AD414</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>107</th>\n",
       "      <td>novel_9198ae084b830436dc78b2c36a55d225</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "<p>108 rows × 3 columns</p>\n",
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       "                                   features   weights   Antibiotic\n",
       "25                                    AB756  0.228143  Doxycycline\n",
       "84                                    AE312  0.137488  Doxycycline\n",
       "19                                    AB530  0.071639  Doxycycline\n",
       "54                                    AC733  0.071626  Doxycycline\n",
       "90                                    AE672  0.051524  Doxycycline\n",
       "..                                      ...       ...          ...\n",
       "18                                    AB529  0.000000  Doxycycline\n",
       "66                                    AD269  0.000000  Doxycycline\n",
       "69                                    AD297  0.000000  Doxycycline\n",
       "70                                    AD414  0.000000  Doxycycline\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Doxycycline\n",
       "\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n"
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       "      <th>19</th>\n",
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       "      <td>0.108689</td>\n",
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       "      <th>54</th>\n",
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       "      <td>0.091310</td>\n",
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       "    <tr>\n",
       "      <th>84</th>\n",
       "      <td>AE312</td>\n",
       "      <td>0.059897</td>\n",
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       "    <tr>\n",
       "      <th>77</th>\n",
       "      <td>AD907</td>\n",
       "      <td>0.058943</td>\n",
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       "    <tr>\n",
       "      <th>63</th>\n",
       "      <td>AD156</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>69</th>\n",
       "      <td>AD297</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>70</th>\n",
       "      <td>AD414</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>75</th>\n",
       "      <td>AD710</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "    <tr>\n",
       "      <th>107</th>\n",
       "      <td>novel_9198ae084b830436dc78b2c36a55d225</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>Doxycycline</td>\n",
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       "<p>108 rows × 3 columns</p>\n",
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       "                                   features   weights   Antibiotic\n",
       "25                                    AB756  0.197027  Doxycycline\n",
       "19                                    AB530  0.108689  Doxycycline\n",
       "54                                    AC733  0.091310  Doxycycline\n",
       "84                                    AE312  0.059897  Doxycycline\n",
       "77                                    AD907  0.058943  Doxycycline\n",
       "..                                      ...       ...          ...\n",
       "63                                    AD156  0.000000  Doxycycline\n",
       "69                                    AD297  0.000000  Doxycycline\n",
       "70                                    AD414  0.000000  Doxycycline\n",
       "75                                    AD710  0.000000  Doxycycline\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Doxycycline\n",
       "\n",
       "[108 rows x 3 columns]"
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     },
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     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n"
     ]
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       "                                   features   weights   Antibiotic\n",
       "54                                    AC733  0.164899  Doxycycline\n",
       "25                                    AB756  0.158840  Doxycycline\n",
       "19                                    AB530  0.123537  Doxycycline\n",
       "84                                    AE312  0.076985  Doxycycline\n",
       "73                                    AD582  0.071048  Doxycycline\n",
       "..                                      ...       ...          ...\n",
       "69                                    AD297  0.000000  Doxycycline\n",
       "70                                    AD414  0.000000  Doxycycline\n",
       "74                                    AD709  0.000000  Doxycycline\n",
       "75                                    AD710  0.000000  Doxycycline\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Doxycycline\n",
       "\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:25: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n"
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     "text": [
      "Doxycycline resistance prediction,\n",
      "   Accuracy        F1  Precision    Recall\n",
      "0  0.858491  0.858298   0.858260  0.858491\n",
      "1  0.801887  0.798418   0.807210  0.801887\n",
      "2  0.828571  0.827486   0.828874  0.828571\n",
      "3  0.847619  0.846654   0.848224  0.847619\n",
      "4  0.828571  0.828095   0.828231  0.828571\n",
      "\n",
      "The misclassified isolates for Doxycycline resistance prediction is stated in a below list:\n",
      "Index(['SRR14011038', 'SRR14010933', 'SRR13999992', 'SRR14024964',\n",
      "       'SRR13726510', 'SRR13999989', 'SRR14000587', 'SRR13727021',\n",
      "       'SRR13999997', 'SRR13712374', 'SRR14000007', 'SRR14026508',\n",
      "       'SRR14000016', 'SRR13727027', 'SRR14025003', 'SRR14010994',\n",
      "       'SRR14026531', 'SRR14010992', 'SRR14026516', 'SRR14000614',\n",
      "       'SRR14026485', 'SRR14022782', 'SRR13725695', 'SRR14026533',\n",
      "       'SRR13712385', 'SRR14024995', 'SRR14024999', 'SRR14026500',\n",
      "       'SRR13727032', 'SRR14024979', 'SRR13712376', 'SRR14026512',\n",
      "       'SRR14000027', 'SRR13712363', 'SRR14000020', 'SRR14000005',\n",
      "       'SRR14022769', 'SRR13999978', 'SRR14022771', 'SRR14000595',\n",
      "       'SRR14026461', 'SRR14026456', 'SRR14026451', 'SRR14000025',\n",
      "       'SRR14026484', 'SRR13999986', 'SRR13712383', 'SRR13999990',\n",
      "       'SRR13712366', 'SRR14026513', 'SRR13725689', 'SRR13999980',\n",
      "       'SRR13725726', 'SRR13726574', 'SRR14011033', 'SRR14000003',\n",
      "       'SRR14026442', 'SRR14026450', 'SRR14024981', 'SRR13726591',\n",
      "       'SRR13712378', 'SRR13712382', 'SRR13726593', 'SRR13726527',\n",
      "       'SRR13726569', 'SRR13712370', 'SRR14000021', 'SRR13999946',\n",
      "       'SRR13726504', 'SRR13725697', 'SRR14010955', 'SRR13712372',\n",
      "       'SRR14026543', 'SRR13999987', 'SRR14024956', 'SRR14024950',\n",
      "       'SRR14024957', 'SRR13726573', 'SRR14024961', 'SRR14026488',\n",
      "       'SRR13726578', 'SRR13712367', 'SRR13727026', 'SRR13712379',\n",
      "       'SRR13727015', 'SRR13999957', 'SRR13726580', 'SRR13999926'],\n",
      "      dtype='object', name='GenomeID')\n"
     ]
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       "84                                    AE312  0.049820  Erythromycin\n",
       "93                                    AF632  0.043059  Erythromycin\n",
       "..                                      ...       ...           ...\n",
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       "74                                    AD709  0.000000  Erythromycin\n",
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       "68                                    AD296  0.000000  Erythromycin\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:30: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n"
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       "25                                    AB756  0.043738  Erythromycin\n",
       "77                                    AD907  0.042241  Erythromycin\n",
       "17                                    AB528  0.035123  Erythromycin\n",
       "..                                      ...       ...           ...\n",
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       "55                                    AC751  0.000000  Erythromycin\n",
       "46                                    AC631  0.000000  Erythromycin\n",
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       "\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:30: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n"
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       "                                   features   weights    Antibiotic\n",
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       "60                                    AD058  0.045467  Erythromycin\n",
       "..                                      ...       ...           ...\n",
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      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:25: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:30: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n"
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       "      <th>56</th>\n",
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       "      <th>63</th>\n",
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       "      <td>0.000000</td>\n",
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       "                                   features   weights    Antibiotic\n",
       "19                                    AB530  0.056217  Erythromycin\n",
       "60                                    AD058  0.055662  Erythromycin\n",
       "25                                    AB756  0.053317  Erythromycin\n",
       "93                                    AF632  0.042346  Erythromycin\n",
       "84                                    AE312  0.039215  Erythromycin\n",
       "..                                      ...       ...           ...\n",
       "75                                    AD710  0.000000  Erythromycin\n",
       "74                                    AD709  0.000000  Erythromycin\n",
       "56                                    AC753  0.000000  Erythromycin\n",
       "63                                    AD156  0.000000  Erythromycin\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Erythromycin\n",
       "\n",
       "[108 rows x 3 columns]"
      ]
     },
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    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:25: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:30: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n"
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      "text/plain": [
       "                                   features   weights    Antibiotic\n",
       "19                                    AB530  0.061379  Erythromycin\n",
       "25                                    AB756  0.052266  Erythromycin\n",
       "77                                    AD907  0.046255  Erythromycin\n",
       "60                                    AD058  0.045384  Erythromycin\n",
       "17                                    AB528  0.042921  Erythromycin\n",
       "..                                      ...       ...           ...\n",
       "57                                    AC754  0.000000  Erythromycin\n",
       "56                                    AC753  0.000000  Erythromycin\n",
       "44                                    AC607  0.000000  Erythromycin\n",
       "43                                    AC544  0.000000  Erythromycin\n",
       "107  novel_9198ae084b830436dc78b2c36a55d225  0.000000  Erythromycin\n",
       "\n",
       "[108 rows x 3 columns]"
      ]
     },
     "metadata": {},
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    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Erythromycin resistance prediction,\n",
      "   Accuracy        F1  Precision    Recall\n",
      "0  0.905263  0.903288   0.901672  0.905263\n",
      "1  0.947368  0.941213   0.950359  0.947368\n",
      "2  0.778947  0.774804   0.770756  0.778947\n",
      "3  0.905263  0.906871   0.908798  0.905263\n",
      "4  0.884211  0.876968   0.872746  0.884211\n",
      "\n",
      "The misclassified isolates for Erythromycin resistance prediction is stated in a below list:\n",
      "Index(['SRR14026538', 'SRR14022776', 'SRR14022738', 'SRR14022782',\n",
      "       'SRR14024952', 'SRR14024995', 'SRR13712392', 'SRR14026501',\n",
      "       'SRR14022774', 'SRR14000003', 'SRR14024973', 'SRR14026445',\n",
      "       'SRR13726527', 'SRR13712364', 'SRR14026477', 'SRR14022771',\n",
      "       'SRR14026475', 'SRR13999995', 'SRR14026460', 'SRR14022746',\n",
      "       'SRR14026454', 'SRR13712368', 'SRR14026526', 'SRR14026448',\n",
      "       'SRR13712494', 'SRR13999967', 'SRR13712374', 'SRR13727001',\n",
      "       'SRR13712362', 'SRR13727013', 'SRR13725723', 'SRR13712366',\n",
      "       'SRR14026512', 'SRR13726535', 'SRR14000027', 'SRR14026545',\n",
      "       'SRR14026514', 'SRR14024985', 'SRR14026492', 'SRR14024958',\n",
      "       'SRR13999974', 'SRR14026500', 'SRR14026508', 'SRR13727015',\n",
      "       'SRR14026546', 'SRR14026447', 'SRR13712361', 'SRR13999930',\n",
      "       'SRR13727021', 'SRR14022765', 'SRR14026472', 'SRR13999960',\n",
      "       'SRR14026513', 'SRR14000018', 'SRR14000005'],\n",
      "      dtype='object', name='GenomeID')\n"
     ]
    }
   ],
   "source": [
    "both_vnco_ML_plasmids_binary = ML_model(prim_binary_Xy_Vancomycin.iloc[:,0:108] ,prim_binary_Xy_Vancomycin[['Vancomycin']], gb_clf)\n",
    "both_doxy_ML_plasmids_binary = ML_model(prim_binary_Xy_Doxycycline.iloc[:,0:108] ,prim_binary_Xy_Doxycycline[['Doxycycline']], gb_clf)\n",
    "both_eryth_ML_plasmids_binary = ML_model(prim_binary_Xy_Erythromycin.iloc[:,0:108] ,prim_binary_Xy_Erythromycin[['Erythromycin']], rf_clf)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 50,
   "id": "d47e0252",
   "metadata": {},
   "outputs": [
    {
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       "      <th></th>\n",
       "      <th>Accuracy</th>\n",
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       "      <th>0</th>\n",
       "      <td>0.959016</td>\n",
       "      <td>0.956579</td>\n",
       "      <td>0.960932</td>\n",
       "      <td>0.959016</td>\n",
       "      <td>Gradient boosting</td>\n",
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       "      <th>1</th>\n",
       "      <td>0.975410</td>\n",
       "      <td>0.976044</td>\n",
       "      <td>0.978484</td>\n",
       "      <td>0.975410</td>\n",
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       "      <th>2</th>\n",
       "      <td>0.983607</td>\n",
       "      <td>0.983897</td>\n",
       "      <td>0.985032</td>\n",
       "      <td>0.983607</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Vancomycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
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       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>0.958678</td>\n",
       "      <td>0.958250</td>\n",
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       "      <td>0.958678</td>\n",
       "      <td>Gradient boosting</td>\n",
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       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0.950413</td>\n",
       "      <td>0.950413</td>\n",
       "      <td>0.950413</td>\n",
       "      <td>0.950413</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Vancomycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>Mean score</th>\n",
       "      <td>0.965425</td>\n",
       "      <td>0.965037</td>\n",
       "      <td>0.966582</td>\n",
       "      <td>0.965425</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Vancomycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>std</th>\n",
       "      <td>0.012184</td>\n",
       "      <td>0.012715</td>\n",
       "      <td>0.013025</td>\n",
       "      <td>0.012184</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Vancomycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "            Accuracy        F1  Precision    Recall         Classifier  \\\n",
       "0           0.959016  0.956579   0.960932  0.959016  Gradient boosting   \n",
       "1           0.975410  0.976044   0.978484  0.975410  Gradient boosting   \n",
       "2           0.983607  0.983897   0.985032  0.983607  Gradient boosting   \n",
       "3           0.958678  0.958250   0.958051  0.958678  Gradient boosting   \n",
       "4           0.950413  0.950413   0.950413  0.950413  Gradient boosting   \n",
       "Mean score  0.965425  0.965037   0.966582  0.965425  Gradient boosting   \n",
       "std         0.012184  0.012715   0.013025  0.012184  Gradient boosting   \n",
       "\n",
       "            Antibiotic                 Features  \n",
       "0           Vancomycin  Plasmid clusters binary  \n",
       "1           Vancomycin  Plasmid clusters binary  \n",
       "2           Vancomycin  Plasmid clusters binary  \n",
       "3           Vancomycin  Plasmid clusters binary  \n",
       "4           Vancomycin  Plasmid clusters binary  \n",
       "Mean score  Vancomycin  Plasmid clusters binary  \n",
       "std         Vancomycin  Plasmid clusters binary  "
      ]
     },
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       "  <tbody>\n",
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       "      <th>0</th>\n",
       "      <td>0.839623</td>\n",
       "      <td>0.839404</td>\n",
       "      <td>0.839337</td>\n",
       "      <td>0.839623</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Doxycycline</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
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       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>0.801887</td>\n",
       "      <td>0.798418</td>\n",
       "      <td>0.807210</td>\n",
       "      <td>0.801887</td>\n",
       "      <td>Gradient boosting</td>\n",
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       "      <th>2</th>\n",
       "      <td>0.838095</td>\n",
       "      <td>0.837374</td>\n",
       "      <td>0.838052</td>\n",
       "      <td>0.838095</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Doxycycline</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>0.857143</td>\n",
       "      <td>0.855941</td>\n",
       "      <td>0.858776</td>\n",
       "      <td>0.857143</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Doxycycline</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0.819048</td>\n",
       "      <td>0.818814</td>\n",
       "      <td>0.818730</td>\n",
       "      <td>0.819048</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Doxycycline</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>Mean score</th>\n",
       "      <td>0.831159</td>\n",
       "      <td>0.829990</td>\n",
       "      <td>0.832421</td>\n",
       "      <td>0.831159</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Doxycycline</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>std</th>\n",
       "      <td>0.018966</td>\n",
       "      <td>0.019689</td>\n",
       "      <td>0.017873</td>\n",
       "      <td>0.018966</td>\n",
       "      <td>Gradient boosting</td>\n",
       "      <td>Doxycycline</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
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       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "            Accuracy        F1  Precision    Recall         Classifier  \\\n",
       "0           0.839623  0.839404   0.839337  0.839623  Gradient boosting   \n",
       "1           0.801887  0.798418   0.807210  0.801887  Gradient boosting   \n",
       "2           0.838095  0.837374   0.838052  0.838095  Gradient boosting   \n",
       "3           0.857143  0.855941   0.858776  0.857143  Gradient boosting   \n",
       "4           0.819048  0.818814   0.818730  0.819048  Gradient boosting   \n",
       "Mean score  0.831159  0.829990   0.832421  0.831159  Gradient boosting   \n",
       "std         0.018966  0.019689   0.017873  0.018966  Gradient boosting   \n",
       "\n",
       "             Antibiotic                 Features  \n",
       "0           Doxycycline  Plasmid clusters binary  \n",
       "1           Doxycycline  Plasmid clusters binary  \n",
       "2           Doxycycline  Plasmid clusters binary  \n",
       "3           Doxycycline  Plasmid clusters binary  \n",
       "4           Doxycycline  Plasmid clusters binary  \n",
       "Mean score  Doxycycline  Plasmid clusters binary  \n",
       "std         Doxycycline  Plasmid clusters binary  "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Accuracy</th>\n",
       "      <th>F1</th>\n",
       "      <th>Precision</th>\n",
       "      <th>Recall</th>\n",
       "      <th>Classifier</th>\n",
       "      <th>Antibiotic</th>\n",
       "      <th>Features</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>0.926316</td>\n",
       "      <td>0.921145</td>\n",
       "      <td>0.920236</td>\n",
       "      <td>0.926316</td>\n",
       "      <td>Random forest</td>\n",
       "      <td>Erythromycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>0.936842</td>\n",
       "      <td>0.927417</td>\n",
       "      <td>0.941100</td>\n",
       "      <td>0.936842</td>\n",
       "      <td>Random forest</td>\n",
       "      <td>Erythromycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>0.789474</td>\n",
       "      <td>0.789474</td>\n",
       "      <td>0.789474</td>\n",
       "      <td>0.789474</td>\n",
       "      <td>Random forest</td>\n",
       "      <td>Erythromycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>0.894737</td>\n",
       "      <td>0.898144</td>\n",
       "      <td>0.902720</td>\n",
       "      <td>0.894737</td>\n",
       "      <td>Random forest</td>\n",
       "      <td>Erythromycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0.884211</td>\n",
       "      <td>0.876968</td>\n",
       "      <td>0.872746</td>\n",
       "      <td>0.884211</td>\n",
       "      <td>Random forest</td>\n",
       "      <td>Erythromycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>Mean score</th>\n",
       "      <td>0.886316</td>\n",
       "      <td>0.882629</td>\n",
       "      <td>0.885255</td>\n",
       "      <td>0.886316</td>\n",
       "      <td>Random forest</td>\n",
       "      <td>Erythromycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>std</th>\n",
       "      <td>0.052166</td>\n",
       "      <td>0.049880</td>\n",
       "      <td>0.052873</td>\n",
       "      <td>0.052166</td>\n",
       "      <td>Random forest</td>\n",
       "      <td>Erythromycin</td>\n",
       "      <td>Plasmid clusters binary</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "            Accuracy        F1  Precision    Recall     Classifier  \\\n",
       "0           0.926316  0.921145   0.920236  0.926316  Random forest   \n",
       "1           0.936842  0.927417   0.941100  0.936842  Random forest   \n",
       "2           0.789474  0.789474   0.789474  0.789474  Random forest   \n",
       "3           0.894737  0.898144   0.902720  0.894737  Random forest   \n",
       "4           0.884211  0.876968   0.872746  0.884211  Random forest   \n",
       "Mean score  0.886316  0.882629   0.885255  0.886316  Random forest   \n",
       "std         0.052166  0.049880   0.052873  0.052166  Random forest   \n",
       "\n",
       "              Antibiotic                 Features  \n",
       "0           Erythromycin  Plasmid clusters binary  \n",
       "1           Erythromycin  Plasmid clusters binary  \n",
       "2           Erythromycin  Plasmid clusters binary  \n",
       "3           Erythromycin  Plasmid clusters binary  \n",
       "4           Erythromycin  Plasmid clusters binary  \n",
       "Mean score  Erythromycin  Plasmid clusters binary  \n",
       "std         Erythromycin  Plasmid clusters binary  "
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "# both_vnco_ML_plasmids_binary_df = both_vnco_ML_plasmids_binary[0]\n",
    "# both_vnco_ML_plasmids_binary_df.loc['Mean score'] = both_vnco_ML_plasmids_binary_df.mean()\n",
    "# both_vnco_ML_plasmids_binary_df.loc['std'] = both_vnco_ML_plasmids_binary_df.std()\n",
    "# both_vnco_ML_plasmids_binary_df['Classifier'] = 'Gradient boosting'\n",
    "# both_vnco_ML_plasmids_binary_df['Antibiotic'] = 'Vancomycin'\n",
    "# both_vnco_ML_plasmids_binary_df['Features'] = 'Plasmid clusters binary'\n",
    "\n",
    "# both_doxy_ML_plasmids_binary_df = both_doxy_ML_plasmids_binary[0]\n",
    "# both_doxy_ML_plasmids_binary_df.loc['Mean score'] = both_doxy_ML_plasmids_binary_df.mean()\n",
    "# both_doxy_ML_plasmids_binary_df.loc['std'] = both_doxy_ML_plasmids_binary_df.std()\n",
    "# both_doxy_ML_plasmids_binary_df['Classifier'] = 'Gradient boosting'\n",
    "# both_doxy_ML_plasmids_binary_df['Antibiotic'] = 'Doxycycline'\n",
    "# both_doxy_ML_plasmids_binary_df['Features'] = 'Plasmid clusters binary'\n",
    "\n",
    "# both_eryth_ML_plasmids_binary_df = both_eryth_ML_plasmids_binary[0]\n",
    "# both_eryth_ML_plasmids_binary_df.loc['Mean score'] = both_eryth_ML_plasmids_binary_df.mean()\n",
    "# both_eryth_ML_plasmids_binary_df.loc['std'] = both_eryth_ML_plasmids_binary_df.std()\n",
    "# both_eryth_ML_plasmids_binary_df['Classifier'] = 'Random forest'\n",
    "# both_eryth_ML_plasmids_binary_df['Antibiotic'] = 'Erythromycin'\n",
    "# both_eryth_ML_plasmids_binary_df['Features'] = 'Plasmid clusters binary'\n",
    "\n",
    "display(both_vnco_ML_plasmids_binary_df)\n",
    "display(both_doxy_ML_plasmids_binary_df)\n",
    "display(both_eryth_ML_plasmids_binary_df)\n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 68,
   "id": "92b9b52f",
   "metadata": {},
   "outputs": [],
   "source": [
    "plasmid_vnco_fs = both_vnco_ML_plasmids_binary[1]\n",
    "plasmid_doxy_fs = both_doxy_ML_plasmids_binary[1]\n",
    "plasmid_eryth_fs = both_eryth_ML_plasmids_binary[1]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 92,
   "id": "24a03c8a",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/pandas/core/frame.py:9203: FutureWarning: Passing 'suffixes' which cause duplicate columns {'weights_x'} in the result is deprecated and will raise a MergeError in a future version.\n",
      "  validate=validate,\n"
     ]
    }
   ],
   "source": [
    "vnco_features = plasmid_vnco_fs[0].drop(columns=['Antibiotic'])\\\n",
    "                .merge(plasmid_vnco_fs[1].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_vnco_fs[2].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_vnco_fs[3].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_vnco_fs[4],on='features')\n",
    "doxy_features = plasmid_doxy_fs[0].drop(columns=['Antibiotic'])\\\n",
    "                .merge(plasmid_doxy_fs[1].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_doxy_fs[2].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_doxy_fs[3].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_doxy_fs[4],on='features')\n",
    "eryth_features = plasmid_eryth_fs[0].drop(columns=['Antibiotic'])\\\n",
    "                .merge(plasmid_eryth_fs[1].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_eryth_fs[2].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_eryth_fs[3].drop(columns=['Antibiotic']) ,on='features')\\\n",
    "                .merge(plasmid_eryth_fs[4],on='features')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 95,
   "id": "bd68666c",
   "metadata": {},
   "outputs": [],
   "source": [
    "vnco_features.to_csv('vnco_plasmid_features_June2023.csv', index=None)\n",
    "doxy_features.to_csv('doxy_plasmid_features_June2023.csv', index=None)\n",
    "eryth_features.to_csv('eryth_plasmid_features_June2023.csv', index=None)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "id": "3f7aa9d6",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "The misclassified isolates for Vancomycin resistance prediction is stated in a below list:\n",
      "Index(['SRR14010961', 'SRR14010945', 'SRR14011027', 'SRR14010955',\n",
      "       'SRR14000612', 'SRR14026521', 'SRR14011017', 'SRR14026519',\n",
      "       'SRR14026554', 'SRR14010949', 'SRR14026552', 'SRR14011012',\n",
      "       'SRR14010952', 'SRR14026490', 'SRR14010998', 'SRR14026555',\n",
      "       'SRR14026517', 'SRR14000586'],\n",
      "      dtype='object', name='GenomeID')\n",
      "\n",
      "\n",
      "The prediction and true labels for Vancomycin is:\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/sklearn/utils/validation.py:63: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples, ), for example using ravel().\n",
      "  return f(*args, **kwargs)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "The misclassified isolates for Doxycycline resistance prediction is stated in a below list:\n",
      "Index(['SRR14011038', 'SRR14010933', 'SRR13999992', 'SRR14024964',\n",
      "       'SRR13726510', 'SRR13999989', 'SRR14000587', 'SRR13999997',\n",
      "       'SRR13712374', 'SRR13726594', 'SRR14000007', 'SRR13712391',\n",
      "       'SRR14026508', 'SRR13712384', 'SRR14000016', 'SRR13727027',\n",
      "       'SRR14000018', 'SRR14025003', 'SRR13727008', 'SRR14010994',\n",
      "       'SRR14026531', 'SRR14010992', 'SRR14026516', 'SRR14000614',\n",
      "       'SRR14026485', 'SRR14022782', 'SRR13725695', 'SRR14026533',\n",
      "       'SRR13712385', 'SRR14024995', 'SRR14024999', 'SRR14026500',\n",
      "       'SRR13727032', 'SRR14024979', 'SRR13712376', 'SRR14026512',\n",
      "       'SRR14000027', 'SRR13712363', 'SRR14000020', 'SRR14000005',\n",
      "       'SRR14022769', 'SRR13999978', 'SRR14022771', 'SRR14000595',\n",
      "       'SRR14026461', 'SRR14026456', 'SRR14026451', 'SRR14000025',\n",
      "       'SRR14026484', 'SRR13999986', 'SRR13712383', 'SRR13999990',\n",
      "       'SRR13712366', 'SRR14026513', 'SRR13725689', 'SRR13999980',\n",
      "       'SRR13725726', 'SRR13726574', 'SRR14011033', 'SRR14000003',\n",
      "       'SRR14026442', 'SRR14026450', 'SRR14024981', 'SRR13726591',\n",
      "       'SRR13712378', 'SRR13712382', 'SRR13726593', 'SRR13726527',\n",
      "       'SRR13726569', 'SRR13712370', 'SRR14000021', 'SRR13999946',\n",
      "       'SRR13726504', 'SRR13725697', 'SRR14010955', 'SRR13712372',\n",
      "       'SRR14026543', 'SRR13999987', 'SRR14024956', 'SRR14024950',\n",
      "       'SRR14024957', 'SRR13726573', 'SRR14024961', 'SRR14026488',\n",
      "       'SRR13726578', 'SRR13712367', 'SRR13727026', 'SRR13712379',\n",
      "       'SRR13727015', 'SRR13999957', 'SRR13726580', 'SRR13999926'],\n",
      "      dtype='object', name='GenomeID')\n",
      "\n",
      "\n",
      "The prediction and true labels for Doxycycline is:\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:119: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:119: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:119: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:119: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "The misclassified isolates for Erythromycin resistance prediction is stated in a below list:\n",
      "Index(['SRR14026538', 'SRR14022776', 'SRR14024949', 'SRR14022782',\n",
      "       'SRR14024952', 'SRR14022754', 'SRR14024995', 'SRR13712392',\n",
      "       'SRR14026501', 'SRR13712373', 'SRR14000003', 'SRR14024973',\n",
      "       'SRR14026445', 'SRR13726527', 'SRR13712364', 'SRR14022771',\n",
      "       'SRR13999995', 'SRR14026460', 'SRR14026454', 'SRR13712368',\n",
      "       'SRR14026526', 'SRR14026448', 'SRR13712494', 'SRR13999967',\n",
      "       'SRR13712374', 'SRR13727001', 'SRR13712362', 'SRR13727013',\n",
      "       'SRR13725723', 'SRR13712366', 'SRR14026512', 'SRR13726535',\n",
      "       'SRR14000027', 'SRR14026545', 'SRR14026514', 'SRR14024985',\n",
      "       'SRR14026492', 'SRR14024958', 'SRR13999974', 'SRR14026500',\n",
      "       'SRR14026508', 'SRR13727015', 'SRR14026546', 'SRR14026447',\n",
      "       'SRR14024959', 'SRR13712361', 'SRR13999930', 'SRR13727021',\n",
      "       'SRR14022765', 'SRR14026472', 'SRR13999960', 'SRR14026513',\n",
      "       'SRR14000018', 'SRR14000005'],\n",
      "      dtype='object', name='GenomeID')\n",
      "\n",
      "\n",
      "The prediction and true labels for Erythromycin is:\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:119: DataConversionWarning: A column-vector y was passed when a 1d array was expected. Please change the shape of y to (n_samples,), for example using ravel().\n"
     ]
    }
   ],
   "source": [
    "plasmid_van_ml_misclassified = true_pred(prim_binary_Xy_Vancomycin.iloc[:,0:108] ,prim_binary_Xy_Vancomycin[['Vancomycin']], gb_clf)\n",
    "plasmid_dox_ml_misclassified = true_pred(prim_binary_Xy_Doxycycline.iloc[:,0:108] ,prim_binary_Xy_Doxycycline[['Doxycycline']], gb_clf) \n",
    "plasmid_erth_ml_misclassified = true_pred(prim_binary_Xy_Erythromycin.iloc[:,0:108] ,prim_binary_Xy_Erythromycin[['Erythromycin']], rf_clf) "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "id": "026253eb",
   "metadata": {},
   "outputs": [],
   "source": [
    "plasmid_van_prediction_all = plasmid_van_ml_misclassified.reset_index().rename(columns={'GenomeID':'Run_accession'})\n",
    "plasmid_dox_prediction_all = plasmid_dox_ml_misclassified.reset_index().rename(columns={'GenomeID':'Run_accession'})\n",
    "plasmid_erth_prediction_all = plasmid_erth_ml_misclassified.reset_index().rename(columns={'GenomeID':'Run_accession'})"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "id": "68cf338b",
   "metadata": {},
   "outputs": [],
   "source": [
    "plasmid_van_prediction_all_species_ab = pd.merge(plasmid_van_prediction_all, meta[['Run_accession','Species']], on=\"Run_accession\")\n",
    "plasmid_van_prediction_all_species_ab['antibiotic']= 'Vancomycin' \n",
    "\n",
    "plasmid_dox_prediction_all_species_ab = pd.merge(plasmid_dox_prediction_all, meta[['Run_accession','Species']], on=\"Run_accession\")\n",
    "plasmid_dox_prediction_all_species_ab['antibiotic']= 'Doxycycline' \n",
    "\n",
    "plasmid_erth_prediction_all_species_ab = pd.merge(plasmid_erth_prediction_all, meta[['Run_accession','Species']], on=\"Run_accession\")\n",
    "plasmid_erth_prediction_all_species_ab['antibiotic']= 'Erythromycin' "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 39,
   "id": "2325f43e",
   "metadata": {},
   "outputs": [],
   "source": [
    "pd.concat([plasmid_van_prediction_all_species_ab, plasmid_dox_prediction_all_species_ab, \n",
    "           plasmid_erth_prediction_all_species_ab]).to_csv('plasmid_clusters_prediction_all.csv',index=None)\n"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "805d2b72",
   "metadata": {},
   "source": [
    "---"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 55,
   "id": "5498d7ed",
   "metadata": {},
   "outputs": [],
   "source": [
    "plasmid_van_ml_misclassified_df = plasmid_van_ml_misclassified.loc[~(plasmid_van_ml_misclassified['y_true'] == plasmid_van_ml_misclassified['y_pred'])]\n",
    "plasmid_dox_ml_misclassified_df = plasmid_dox_ml_misclassified.loc[~(plasmid_dox_ml_misclassified['y_true'] == plasmid_dox_ml_misclassified['y_pred'])]\n",
    "plasmid_erth_ml_misclassified_df = plasmid_erth_ml_misclassified.loc[~(plasmid_erth_ml_misclassified['y_true'] == plasmid_erth_ml_misclassified['y_pred'])]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 58,
   "id": "6b60847e",
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:1: SettingWithCopyWarning: \n",
      "A value is trying to be set on a copy of a slice from a DataFrame.\n",
      "Try using .loc[row_indexer,col_indexer] = value instead\n",
      "\n",
      "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n",
      "  \"\"\"Entry point for launching an IPython kernel.\n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:2: SettingWithCopyWarning: \n",
      "A value is trying to be set on a copy of a slice from a DataFrame.\n",
      "Try using .loc[row_indexer,col_indexer] = value instead\n",
      "\n",
      "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n",
      "  \n",
      "/home/jee/conda/envs/ml_prediction/lib/python3.7/site-packages/ipykernel_launcher.py:3: SettingWithCopyWarning: \n",
      "A value is trying to be set on a copy of a slice from a DataFrame.\n",
      "Try using .loc[row_indexer,col_indexer] = value instead\n",
      "\n",
      "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n",
      "  This is separate from the ipykernel package so we can avoid doing imports until\n"
     ]
    }
   ],
   "source": [
    "plasmid_van_ml_misclassified_df['ab'] = 'vancomycin'\n",
    "plasmid_dox_ml_misclassified_df['ab'] = 'doxycycline'\n",
    "plasmid_erth_ml_misclassified_df['ab'] = 'erythromycin'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 61,
   "id": "24153e31",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
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       "\n",
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       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>y_true</th>\n",
       "      <th>y_pred</th>\n",
       "      <th>ab</th>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>GenomeID</th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>SRR14010961</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>vancomycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR14010945</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>vancomycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR14011027</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>vancomycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR14010955</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>vancomycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR14000612</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>vancomycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR14026472</th>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>erythromycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR13999960</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>erythromycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR14026513</th>\n",
       "      <td>1</td>\n",
       "      <td>0</td>\n",
       "      <td>erythromycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR14000018</th>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>erythromycin</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>SRR14000005</th>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>erythromycin</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>158 rows × 3 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "             y_true  y_pred            ab\n",
       "GenomeID                                 \n",
       "SRR14010961       1       0    vancomycin\n",
       "SRR14010945       1       0    vancomycin\n",
       "SRR14011027       1       0    vancomycin\n",
       "SRR14010955       1       0    vancomycin\n",
       "SRR14000612       1       0    vancomycin\n",
       "...             ...     ...           ...\n",
       "SRR14026472       0       1  erythromycin\n",
       "SRR13999960       1       0  erythromycin\n",
       "SRR14026513       1       0  erythromycin\n",
       "SRR14000018       0       1  erythromycin\n",
       "SRR14000005       0       1  erythromycin\n",
       "\n",
       "[158 rows x 3 columns]"
      ]
     },
     "execution_count": 61,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "plasmid_misclassified_df = pd.concat([plasmid_van_ml_misclassified_df, plasmid_dox_ml_misclassified_df, plasmid_erth_ml_misclassified_df])\n",
    "# plasmid_misclassified_df.to_csv('plasmid_clusters_misclassified_df.csv')\n",
    "plasmid_misclassified_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 65,
   "id": "f0600d31",
   "metadata": {},
   "outputs": [
    {
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       "</table>\n",
       "<p>14932 rows × 24 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "      Run_accession molecule_type primary_cluster_id secondary_cluster_id  \\\n",
       "1404    SRR14000003    chromosome                  -                    -   \n",
       "1405    SRR14000003    chromosome                  -                    -   \n",
       "1406    SRR14000003    chromosome                  -                    -   \n",
       "1407    SRR14000003    chromosome                  -                    -   \n",
       "1408    SRR14000003    chromosome                  -                    -   \n",
       "...             ...           ...                ...                  ...   \n",
       "69342   SRR13999960    chromosome                  -                    -   \n",
       "69343   SRR13999960    chromosome                  -                    -   \n",
       "69344   SRR13999960    chromosome                  -                    -   \n",
       "69345   SRR13999960    chromosome                  -                    -   \n",
       "69346   SRR13999960    chromosome                  -                    -   \n",
       "\n",
       "                         contig_id    size         gc  \\\n",
       "1404   1_length=392667_depth=1.00x  392667  37.061938   \n",
       "1405   2_length=284894_depth=0.95x  284894  36.014447   \n",
       "1406   3_length=270251_depth=1.10x  270251  38.543798   \n",
       "1407   4_length=223660_depth=0.88x  223660  37.600376   \n",
       "1408   5_length=185026_depth=0.88x  185026  37.572017   \n",
       "...                            ...     ...        ...   \n",
       "69342    43_length=293_depth=4.37x     293  39.931741   \n",
       "69343    44_length=232_depth=2.07x     232  31.465517   \n",
       "69344    45_length=137_depth=3.26x     137  51.094891   \n",
       "69345    46_length=124_depth=3.83x     124  43.548387   \n",
       "69346    47_length=105_depth=3.22x     105  55.238095   \n",
       "\n",
       "                                    md5 circularity_status rep_type(s)  ...  \\\n",
       "1404   f98cb87350501d5c8649990c19ef1c3f         incomplete           -  ...   \n",
       "1405   e5cc961378dab62e2929ef99e3374834         incomplete           -  ...   \n",
       "1406   0a776cac048e7b45136eb155c099da97         incomplete           -  ...   \n",
       "1407   fa13d04659f671947174b00532fb4220         incomplete           -  ...   \n",
       "1408   99af63663ce95aa3b997b3a75ea35655         incomplete           -  ...   \n",
       "...                                 ...                ...         ...  ...   \n",
       "69342  f0b18d99b03e94d0e2db114b653fd6ed         incomplete           -  ...   \n",
       "69343  a5bb3f544408b0b59a7e8a3c4d82e87e         incomplete           -  ...   \n",
       "69344  76575ecc7fe119d9adbf384e03a7bc16         incomplete           -  ...   \n",
       "69345  90d1820d2597529375bdd009653a0b10         incomplete           -  ...   \n",
       "69346  87d618fcd963324e9761c8ab7354776e         incomplete           -  ...   \n",
       "\n",
       "      mpf_type_accession(s) orit_type(s) orit_accession(s) predicted_mobility  \\\n",
       "1404                      -            -                 -                  -   \n",
       "1405                      -            -                 -                  -   \n",
       "1406                      -            -                 -                  -   \n",
       "1407                      -            -                 -                  -   \n",
       "1408                      -            -                 -                  -   \n",
       "...                     ...          ...               ...                ...   \n",
       "69342                     -            -                 -                  -   \n",
       "69343                     -            -                 -                  -   \n",
       "69344                     -            -                 -                  -   \n",
       "69345                     -            -                 -                  -   \n",
       "69346                     -            -                 -                  -   \n",
       "\n",
       "      mash_nearest_neighbor mash_neighbor_distance  \\\n",
       "1404                      -                      -   \n",
       "1405                      -                      -   \n",
       "1406                      -                      -   \n",
       "1407                      -                      -   \n",
       "1408                      -                      -   \n",
       "...                     ...                    ...   \n",
       "69342                     -                      -   \n",
       "69343                     -                      -   \n",
       "69344                     -                      -   \n",
       "69345                     -                      -   \n",
       "69346                     -                      -   \n",
       "\n",
       "      mash_neighbor_identification repetitive_dna_id repetitive_dna_type  \\\n",
       "1404                             -                 -                   -   \n",
       "1405                             -                 -                   -   \n",
       "1406                             -                 -                   -   \n",
       "1407                             -                 -                   -   \n",
       "1408                             -                 -                   -   \n",
       "...                            ...               ...                 ...   \n",
       "69342                            -                 -                   -   \n",
       "69343                            -                 -                   -   \n",
       "69344                            -                 -                   -   \n",
       "69345                            -                 -                   -   \n",
       "69346                            -                 -                   -   \n",
       "\n",
       "      filtering_reason  \n",
       "1404                 -  \n",
       "1405                 -  \n",
       "1406                 -  \n",
       "1407                 -  \n",
       "1408                 -  \n",
       "...                ...  \n",
       "69342                -  \n",
       "69343                -  \n",
       "69344                -  \n",
       "69345                -  \n",
       "69346                -  \n",
       "\n",
       "[14932 rows x 24 columns]"
      ]
     },
     "execution_count": 65,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "mob_all[mob_all['Run_accession'].isin(plasmid_misclassified_df.index)]#.to_csv('plasmid_annot_misclassified_cases.csv',index=None)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "id": "8feff16f",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array(['CP003586', 'CP019993', 'CP019209', 'CP027498', 'CP044275',\n",
       "       'CP018066'], dtype=object)"
      ]
     },
     "execution_count": 16,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "mobtyper647 = pd.read_csv('/home/jee/conjugation_study/short_read_mobtyper647_df.csv')\n",
    "# display(mobtyper647.columns)\n",
    "mobtyper647[mobtyper647['primary_cluster_id'].str.contains('AC733', na=None, case=None)]['mash_nearest_neighbor'].unique()\n",
    "# [['sample_id', 'num_contigs', 'size', 'gc', 'predicted_mobility','mash_nearest_neighbor', 'mash_neighbor_distance',\n",
    "#   'mash_neighbor_identification', 'primary_cluster_id', 'secondary_cluster_id', 'Run_accession']]"
   ]
  }
 ],
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