v0.1.10 A dockerized version of IDP with an example

The Docker contains more than just IDP, it has the whole IDP pipeline

Long read correction

• LSC
• LoRDEC

Short read alignment

• hisat2 (good contemporary aligner)
• Bowtie (for LSC)
• Bowtie2 (for SpliceMap)
• seqmap (for SpliceMap and IDP primers)
• SpliceMap (legacy aligner in the IDP pipeline)

Long read alignment

• GMAP for long read alignment

Helper scripts

• seq-tools for preparing long read names and short read alignments from hisat for use in IDP

And of course IDP for isoform discovery.

The readme contains a useful workflow.

v0.1.9

The version at the fork.