Moved plotly to suggests and didn't trigger a new warning/error. The …

…NOTE stays unless I completely remove all plotly components from the package(which would make the shiny app unusable), but that's the best that I can do (and what sufficed for others to keep their package on CRAN).

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: CNVScope
 Type: Package
 Title: A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization
-Version: 3.5.5
+Version: 3.5.6
 Date: 2021-01-08
 Author: James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
 Maintainer: James Dalgleish <[email protected]>
@@ -11,9 +11,9 @@ Imports: tidyr,reshape2,magrittr,
   jointseg,shiny,RCurl,foreach,
   GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats,
   plyr,data.table,dplyr,numbers,rtracklayer,
-  doParallel,stringr,plotly
+  doParallel,stringr
 Suggests: knitr, remotes,pwr,ComplexHeatmap,rmarkdown,
-  HiCseg,igraph,visNetwork,circlize,
+  HiCseg,igraph,visNetwork,circlize,plotly,
   InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,
   shinythemes,shinycssloaders,DT,logging,heatmaply,
   S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,

NAMESPACE

@@ -54,13 +54,6 @@ importFrom(foreach,foreach)
 importFrom(ggplot2,scale_fill_gradient2)
 importFrom(jointseg,jointSeg)
 importFrom(matrixStats,colSds)
-importFrom(plotly,add_histogram)
-importFrom(plotly,add_trace)
-importFrom(plotly,event_data)
-importFrom(plotly,ggplotly)
-importFrom(plotly,layout)
-importFrom(plotly,plot_ly)
-importFrom(plotly,renderPlotly)
 importFrom(plyr,ddply)
 importFrom(reshape2,colsplit)
 importFrom(rtracklayer,import.bed)

R/CNVScopeserver.R

@@ -7,7 +7,6 @@
 #' @rawNamespace import(shiny, except = c(runExample,renderDataTable))
 #' @rawNamespace import(RCurl, except = reset)
 #' @rawNamespace import(data.table, except = c(melt, dcast))
-#' @importFrom plotly event_data renderPlotly layout ggplotly add_histogram add_trace plot_ly
 #' @param session The shiny session object for the application.
 #' @param input shiny server input
 #' @param output shiny server output