add badelf and warren_lab apps 🎅

[SWeav02]

Add a badelf app with a class oriented version of the badelf algorithm. Also add a warrenapp app which contains many convenience workflows for the warren lab.

[SWeav02]

@jacksund I think I've made adjustments based off of each of your comments. I'm working on running the test suite now (#546 (comment)) and prepping for a new release.

[jacksund]

thanks for going through! Normally release prep should be its own PR -- also I'm the only one that has permissions to do some of the steps listed in that guide.

I'm going to go through and make some edits on your code, then merge. I may move the release changes into a separate PR too

[jacksund]

fyi -- the prebuilt database will be broken for this PR because you deleted the migration files in one of your recent commits 0dd5ce0. These migrations need to be re-added and then you can use simmate database update with the prebuilt db

I learned earlier this year that we were incorrectly deleting/restarting migrations every time we had an update. We actually want to commit migrations to the repo! That way users can easily update their database between simmate versions / new releases. Other django apps do this too (here is allauth's migrations as an example here)

[SWeav02]

fyi -- the prebuilt database will be broken for this PR because you deleted the migration files in one of your recent commits 0dd5ce0. These migrations need to be re-added and then you can use simmate database update with the prebuilt db

I learned earlier this year that we were incorrectly deleting/restarting migrations every time we had an update. We actually want to commit migrations to the repo! That way users can easily update their database between simmate versions / new releases. Other django apps do this too (here is allauth's migrations as an example here)

Oops good to know. I'll add them back and commit them.

[jacksund]

also not sure if you saw this: https://github.com/SWeav02/simmate/pull/20. Once merged, it will update this PR too

[SWeav02]

also not sure if you saw this: SWeav02#20. Once merged, it will update this PR too

I'm looking through it now 😆

[jacksund]

@SWeav02 take a look through & merge https://github.com/SWeav02/simmate/pull/22 when you get the chance. I removed badelf and warren_lab from the default apps for now and made some minor changes elsewhere. This will put everything in a state where I can actually merge your PR. Then the edits needed in order to allow these apps as defaults will be handled in separate PRs

[jacksund]

only the linux ci is failing but its unrelated to this PR. The error is because a new pydantic version was released 6 hrs ago https://anaconda.org/conda-forge/pydantic.

merging and will address the pydantic issue elsewhere