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Docker builds for all tools used by HIMC

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Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
CARD		CARD
STRIDE		STRIDE
cell2location		cell2location
cytof		cytof
cytof_notebooks		cytof_notebooks
giotto		giotto
himc_rstudio		himc_rstudio
qupath		qupath
rctd		rctd
rpy2_singlecell		rpy2_singlecell
seurat		seurat
singler		singler
spatialdecon		spatialdecon
spotlight		spotlight
zellkonverter		zellkonverter
zellkonverter_singler		zellkonverter_singler
README.md		README.md

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himc_dockers

Docker builds for all tools used by HIMC. Base build contains R version 4.2.1, Seurat and Seurat Disk

To use on Minerva

ml singularity

singularity pull docker://dsouzd04/himc_seurat

singularity shell himc_seurat.sif # go inside container

singularity exec R -e 'library(Seurat)' # run command

Tools

Seurat v4.2.1

SPOTlight Bioconductor v1.0.0

RCTD from spacexr v2.0.3

CARD v1.0.0

Giotto v1.1.2

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Docker builds for all tools used by HIMC

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