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@@ -371,71 +371,6 @@ USER ${NB_UID} | |
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WORKDIR "${HOME}" | ||
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############################################################################ | ||
################ Dependency: jupyter/datascience-notebook ################## | ||
############################################################################ | ||
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# Copyright (c) Jupyter Development Team. | ||
# Distributed under the terms of the Modified BSD License. | ||
ARG OWNER=jupyter | ||
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LABEL maintainer="Jupyter Project <[email protected]>" | ||
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# Fix: https://github.com/hadolint/hadolint/wiki/DL4006 | ||
# Fix: https://github.com/koalaman/shellcheck/wiki/SC3014 | ||
SHELL ["/bin/bash", "-o", "pipefail", "-c"] | ||
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USER root | ||
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# R pre-requisites | ||
RUN apt-get update --yes && \ | ||
apt-get install --yes --no-install-recommends \ | ||
fonts-dejavu \ | ||
gfortran \ | ||
gcc && \ | ||
apt-get clean && rm -rf /var/lib/apt/lists/* | ||
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# Julia dependencies | ||
# install Julia packages in /opt/julia instead of ${HOME} | ||
ENV JULIA_DEPOT_PATH=/opt/julia \ | ||
JULIA_PKGDIR=/opt/julia | ||
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# Setup Julia | ||
RUN /opt/setup-scripts/setup-julia.bash | ||
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USER ${NB_UID} | ||
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# Setup IJulia kernel & other packages | ||
RUN /opt/setup-scripts/setup-julia-packages.bash | ||
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# R packages including IRKernel which gets installed globally. | ||
# r-e1071: dependency of the caret R package | ||
RUN mamba install --yes \ | ||
'r-base' \ | ||
'r-caret' \ | ||
'r-crayon' \ | ||
'r-devtools' \ | ||
'r-e1071' \ | ||
'r-forecast' \ | ||
'r-hexbin' \ | ||
'r-htmltools' \ | ||
'r-htmlwidgets' \ | ||
'r-irkernel' \ | ||
'r-nycflights13' \ | ||
'r-randomforest' \ | ||
'r-rcurl' \ | ||
'r-rmarkdown' \ | ||
'r-rodbc' \ | ||
'r-rsqlite' \ | ||
'r-shiny' \ | ||
'r-tidymodels' \ | ||
'r-tidyverse' \ | ||
'rpy2' \ | ||
'unixodbc' && \ | ||
mamba clean --all -f -y && \ | ||
fix-permissions "${CONDA_DIR}" && \ | ||
fix-permissions "/home/${NB_USER}" | ||
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############################################################################ | ||
########################## Dependency: gpulibs ############################# | ||
############################################################################ | ||
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