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set to python-only by default
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ChristophSchranz committed Dec 14, 2023
1 parent 59c7f01 commit de3ca3f
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Expand Up @@ -371,71 +371,6 @@ USER ${NB_UID}

WORKDIR "${HOME}"

############################################################################
################ Dependency: jupyter/datascience-notebook ##################
############################################################################

# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
ARG OWNER=jupyter

LABEL maintainer="Jupyter Project <[email protected]>"

# Fix: https://github.com/hadolint/hadolint/wiki/DL4006
# Fix: https://github.com/koalaman/shellcheck/wiki/SC3014
SHELL ["/bin/bash", "-o", "pipefail", "-c"]

USER root

# R pre-requisites
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
fonts-dejavu \
gfortran \
gcc && \
apt-get clean && rm -rf /var/lib/apt/lists/*

# Julia dependencies
# install Julia packages in /opt/julia instead of ${HOME}
ENV JULIA_DEPOT_PATH=/opt/julia \
JULIA_PKGDIR=/opt/julia

# Setup Julia
RUN /opt/setup-scripts/setup-julia.bash

USER ${NB_UID}

# Setup IJulia kernel & other packages
RUN /opt/setup-scripts/setup-julia-packages.bash

# R packages including IRKernel which gets installed globally.
# r-e1071: dependency of the caret R package
RUN mamba install --yes \
'r-base' \
'r-caret' \
'r-crayon' \
'r-devtools' \
'r-e1071' \
'r-forecast' \
'r-hexbin' \
'r-htmltools' \
'r-htmlwidgets' \
'r-irkernel' \
'r-nycflights13' \
'r-randomforest' \
'r-rcurl' \
'r-rmarkdown' \
'r-rodbc' \
'r-rsqlite' \
'r-shiny' \
'r-tidymodels' \
'r-tidyverse' \
'rpy2' \
'unixodbc' && \
mamba clean --all -f -y && \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"

############################################################################
########################## Dependency: gpulibs #############################
############################################################################
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