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@@ -290,107 +290,6 @@ RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \ | |
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USER $NB_UID | ||
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WORKDIR $HOME | ||
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############################################################################ | ||
################ Dependency: jupyter/datascience-notebook ################## | ||
############################################################################ | ||
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# Copyright (c) Jupyter Development Team. | ||
# Distributed under the terms of the Modified BSD License. | ||
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LABEL maintainer="Jupyter Project <[email protected]>" | ||
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# Set when building on Travis so that certain long-running build steps can | ||
# be skipped to shorten build time. | ||
ARG TEST_ONLY_BUILD | ||
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# Fix DL4006 | ||
SHELL ["/bin/bash", "-o", "pipefail", "-c"] | ||
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USER root | ||
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# Julia installation | ||
# Default values can be overridden at build time | ||
# (ARGS are in lower case to distinguish them from ENV) | ||
# Check https://julialang.org/downloads/ | ||
ARG julia_version="1.5.4" | ||
# SHA256 checksum | ||
ARG julia_checksum="80dec351d1a593e8ad152636971a48d0c81bfcfab92c87f3604663616f1e8bc5" | ||
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# R pre-requisites | ||
RUN apt-get update && \ | ||
apt-get install -y --no-install-recommends \ | ||
fonts-dejavu \ | ||
gfortran \ | ||
gcc && \ | ||
apt-get clean && rm -rf /var/lib/apt/lists/* | ||
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# Julia dependencies | ||
# install Julia packages in /opt/julia instead of $HOME | ||
ENV JULIA_DEPOT_PATH=/opt/julia \ | ||
JULIA_PKGDIR=/opt/julia \ | ||
JULIA_VERSION="${julia_version}" | ||
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WORKDIR /tmp | ||
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# hadolint ignore=SC2046 | ||
RUN mkdir "/opt/julia-${JULIA_VERSION}" && \ | ||
wget -q https://julialang-s3.julialang.org/bin/linux/x64/$(echo "${JULIA_VERSION}" | cut -d. -f 1,2)"/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" && \ | ||
echo "${julia_checksum} *julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | sha256sum -c - && \ | ||
tar xzf "julia-${JULIA_VERSION}-linux-x86_64.tar.gz" -C "/opt/julia-${JULIA_VERSION}" --strip-components=1 && \ | ||
rm "/tmp/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | ||
RUN ln -fs /opt/julia-*/bin/julia /usr/local/bin/julia | ||
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# Show Julia where conda libraries are \ | ||
RUN mkdir /etc/julia && \ | ||
echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" >> /etc/julia/juliarc.jl && \ | ||
# Create JULIA_PKGDIR \ | ||
mkdir "${JULIA_PKGDIR}" && \ | ||
chown "${NB_USER}" "${JULIA_PKGDIR}" && \ | ||
fix-permissions "${JULIA_PKGDIR}" | ||
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USER $NB_UID | ||
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# R packages including IRKernel which gets installed globally. | ||
RUN conda install --quiet --yes \ | ||
'r-base=4.0.3' \ | ||
'r-caret=6.0*' \ | ||
'r-crayon=1.4*' \ | ||
'r-devtools=2.3*' \ | ||
'r-forecast=8.14*' \ | ||
'r-hexbin=1.28*' \ | ||
'r-htmltools=0.5*' \ | ||
'r-htmlwidgets=1.5*' \ | ||
'r-irkernel=1.1*' \ | ||
'r-nycflights13=1.0*' \ | ||
'r-randomforest=4.6*' \ | ||
'r-rcurl=1.98*' \ | ||
'r-rmarkdown=2.7*' \ | ||
'r-rsqlite=2.2*' \ | ||
'r-shiny=1.6*' \ | ||
'r-tidyverse=1.3*' \ | ||
'rpy2=3.4*' && \ | ||
conda clean --all -f -y && \ | ||
fix-permissions "${CONDA_DIR}" && \ | ||
fix-permissions "/home/${NB_USER}" | ||
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# Add Julia packages. Only add HDF5 if this is not a test-only build since | ||
# it takes roughly half the entire build time of all of the images on Travis | ||
# to add this one package and often causes Travis to timeout. | ||
# | ||
# Install IJulia as jovyan and then move the kernelspec out | ||
# to the system share location. Avoids problems with runtime UID change not | ||
# taking effect properly on the .local folder in the jovyan home dir. | ||
RUN julia -e 'import Pkg; Pkg.update()' && \ | ||
(test $TEST_ONLY_BUILD || julia -e 'import Pkg; Pkg.add("HDF5")') && \ | ||
julia -e "using Pkg; pkg\"add IJulia\"; pkg\"precompile\"" && \ | ||
# move kernelspec out of home \ | ||
mv "${HOME}/.local/share/jupyter/kernels/julia"* "${CONDA_DIR}/share/jupyter/kernels/" && \ | ||
chmod -R go+rx "${CONDA_DIR}/share/jupyter" && \ | ||
rm -rf "${HOME}/.local" && \ | ||
fix-permissions "${JULIA_PKGDIR}" "${CONDA_DIR}/share/jupyter" | ||
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WORKDIR $HOME | ||
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############################################################################ | ||
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