support antimony

src/sbml-to-xhtml/index.js

@@ -3,6 +3,7 @@ const sbml2tableText = require('./sbml2table.xsl');
 const sbml2mathText = require('./sbml2math.xsl');
 const sbml2elementText = require('./sbml2element.xsl');
 const sbml2hetaText = require('./sbml2heta.xsl');
+const sbml2antimonyText = require('./sbml2antimony.xsl');
 
 const sbml3tableText = require('./sbml3table.xsl');
 const sbml3mathText = require('./sbml3math.xsl');
@@ -12,11 +13,24 @@ module.exports = function(parser){
  let sbml2math = parser.parseFromString(sbml2mathText, 'application/xml');
  let sbml2element = parser.parseFromString(sbml2elementText, 'application/xml');
  let sbml2heta = parser.parseFromString(sbml2hetaText, 'application/xml');
+ let sbml2antimony = parser.parseFromString(sbml2antimonyText, 'application/xml');
 
  let sbml3table = parser.parseFromString(sbml3tableText, 'application/xml');
  let sbml3math = parser.parseFromString(sbml3mathText, 'application/xml');
 
  return [
+ {
+ format: 'SBML',
+ level: '2',
+ name: 'sbml2table',
+ xslt: sbml2table,
+ parameters: ['useNames', 'correctMathml', 'equationsOff'],
+ parameterNotes: {
+ useNames: 'Use "names" attribute instead of "id" attribute. Turn on the option for models with very long or uninformative ids',
+ correctMathml: 'Make some correction for MathML generated by SimBiology. Some of SimBiology models generate wrong MathML. Try this option if something looks wrong in equations.',
+ equationsOff: 'Use this option if you are not interested in math. It reduces time of transformation.'
+ }
+ },
  {
  format: 'SBML',
  level: '2',
@@ -30,14 +44,10 @@ module.exports = function(parser){
  {
  format: 'SBML',
  level: '2',
- name: 'sbml2table',
- xslt: sbml2table,
- parameters: ['useNames', 'correctMathml', 'equationsOff'],
- parameterNotes: {
- useNames: 'Use "names" attribute instead of "id" attribute. Turn on the option for models with very long or uninformative ids',
- correctMathml: 'Make some correction for MathML generated by SimBiology. Some of SimBiology models generate wrong MathML. Try this option if something looks wrong in equations.',
- equationsOff: 'Use this option if you are not interested in math. It reduces time of transformation.'
- }
+ name: 'sbml2antimony',
+ xslt: sbml2antimony,
+ parameters: [],
+ parameterNotes: {}
  },
  {
  format: 'SBML',
@@ -63,6 +73,18 @@ module.exports = function(parser){
  equationsOff: 'Use this option if you are not interested in math. It reduces time of transformation.'
  }
  },
+ {
+ format: 'SBML',
+ level: '3',
+ name: 'sbml3table',
+ xslt: sbml3table,
+ parameters: ['useNames', 'correctMathml', 'equationsOff'],
+ parameterNotes: {
+ useNames: 'Use "names" attribute instead of "id" attribute. Turn on the option for models with very long or uninformative ids',
+ correctMathml: 'Make some correction for MathML generated by SimBiology. Some of SimBiology models generate wrong MathML. Try this option if something looks wrong in equations.',
+ equationsOff: 'Use this option if you are not interested in math. It reduces time of transformation.'
+ }
+ },
  {
  format: 'SBML',
  level: '3',
@@ -76,14 +98,10 @@ module.exports = function(parser){
  {
  format: 'SBML',
  level: '3',
- name: 'sbml3table',
- xslt: sbml3table,
- parameters: ['useNames', 'correctMathml', 'equationsOff'],
- parameterNotes: {
- useNames: 'Use "names" attribute instead of "id" attribute. Turn on the option for models with very long or uninformative ids',
- correctMathml: 'Make some correction for MathML generated by SimBiology. Some of SimBiology models generate wrong MathML. Try this option if something looks wrong in equations.',
- equationsOff: 'Use this option if you are not interested in math. It reduces time of transformation.'
- }
+ name: 'sbml3antimony',
+ xslt: sbml2antimony,
+ parameters: [],
+ parameterNotes: {}
  },
  {
  format: 'SBML',