Add attentions and apply minor fixes #7
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| # Conda w/ GitHub Actions | |
| # https://autobencoder.com/2020-08-24-conda-actions/ | |
| name: Conda Test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ '*' ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| # Cache to save build time | |
| # https://github.com/marketplace/actions/setup-miniconda#caching | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if etc/example-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('environment.yml') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: anaconda-client-env | |
| channel-priority: strict | |
| environment-file: environment.yml | |
| use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly | |
| # setup a Miniconda variant without specifying a environment file | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: anaconda-client-env | |
| use-mamba: true | |
| - name: Install Extra Python dependencies | |
| run: | | |
| conda activate anaconda-client-env | |
| mamba install --name anaconda-client-env pytest | |
| - name: Set Python Path | |
| run: conda env config vars set PYTHONPATH=$(pwd):$(pwd)/src | |
| # refresh the cache every 24 hours to avoid inconsistencies of package versions | |
| - name: Get Date | |
| id: get-date | |
| run: echo "::set-output name=today::$(/bin/date -u '+%Y%m%d')" | |
| shell: bash | |
| - name: Cache Conda env | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: conda-${{ runner.os }}--${{ runner.arch }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| # Increase this value to reset cache if etc/example-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| id: cache | |
| # Finally, update the environment based on the environment file if the cache does not exist. | |
| - name: Update environment | |
| run: | | |
| mamba env update -n anaconda-client-env -f environment.yml | |
| mamba install --name anaconda-client-env pytest | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Test with pytest | |
| run: | | |
| conda activate anaconda-client-env | |
| python -m pytest tests/ |