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If you download and install the napari 0.4.18 bundle, you can install napari-imagej via the graphical plugin installer, which is great. However, after installation, attempting to launch napari-imagej crashes with SIGSEGV:
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00007f15fdce7d00, pid=43616, tid=43616
#
# JRE version: OpenJDK Runtime Environment (11.0.15) (build 11.0.15-internal+0-adhoc..src)
# Java VM: OpenJDK 64-Bit Server VM (11.0.15-internal+0-adhoc..src, mixed mode, tiered, compressed oops, g1 gc, linux-amd64)
# Problematic frame:
# C [QtWidgets.cpython-39-x86_64-linux-gnu.so+0x6e7d00] QTreeWidgetItem_PTR_CppToPython_QTreeWidgetItem(void const*)+0x40
#
# Core dump will be written. Default location: Core dumps may be processed with "/usr/share/apport/apport -p%p -s%s -c%c -d%d -P%P -u%u -g%g -- %E" (or dumping to /home/curtis/code/scijava/scijava-coding-style/core.43616)
#
# An error report file with more information is saved as:
# /home/curtis/code/scijava/scijava-coding-style/hs_err_pid43616.log
#
# If you would like to submit a bug report, please visit:
# https://bugreport.java.com/bugreport/crash.jsp
#
19 [1] 43616 IOT instruction (core dumped) /home/curtis/.local/napari-0.4.18/envs/napari-0.4.18/bin/python -m napari
At first I thought maybe it's the version of openjdk that was installed that way, but it happens with my system OpenJDK 1.11.0, as well as zulu8.70.0.23-ca-fx-jdk8.0.372-linux_x64, always at the same problematic frame QTreeWidgetItem_PTR_CppToPython_QTreeWidgetItem(void const*).
From my napari-imagej-dev environment, created using the dev-environment.yml present in this repository, I am able to run napari-imagej successfully. Here is a diff of the conda list output between the non-working and working environments (- is "bad" napari bundle environment; + is "good" napari-imagej dev environment):
If you download and install the napari 0.4.18 bundle, you can install napari-imagej via the graphical plugin installer, which is great. However, after installation, attempting to launch napari-imagej crashes with SIGSEGV:
At first I thought maybe it's the version of openjdk that was installed that way, but it happens with my system OpenJDK 1.11.0, as well as zulu8.70.0.23-ca-fx-jdk8.0.372-linux_x64, always at the same problematic frame
QTreeWidgetItem_PTR_CppToPython_QTreeWidgetItem(void const*).From my napari-imagej-dev environment, created using the
dev-environment.ymlpresent in this repository, I am able to run napari-imagej successfully. Here is a diff of theconda listoutput between the non-working and working environments (-is "bad" napari bundle environment;+is "good" napari-imagej dev environment):environment diff
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