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8-bit ND2 files stretch bug #263

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Simone-Massalini opened this issue Dec 16, 2024 · 3 comments
Open

8-bit ND2 files stretch bug #263

Simone-Massalini opened this issue Dec 16, 2024 · 3 comments

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@Simone-Massalini
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Some ND2 files (acquired with NIS elements software, Nikon) in 8-bit at certain resolutions (e.g. 1066x590, 1277x1021) look stretched when opened in Fiji (attached image – left opened in Fiji, right the same image in NIS-Elements).
The files contain multiple time points (fast timelapses).
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@ctrueden
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@Simone-Massalini ImageJ does not have built-in support for ND2. How are you opening your ND2 files in Fiji? Via Bio-Formats?

@Simone-Massalini
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@ctrueden I am just using Fiji as it is, hyperstack and no other option selected. It works pretty well with 3200x3200 images (16-bit).

@ctrueden
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@Simone-Massalini OK, thanks, that means Bio-Formats is being used under the hood. The best thing to do is report the issue on the Image.sc Forum as described in the Bio-Formats bug reporting guidelines. And it will be super helpful if you can include a sample ND2 file exhibiting the issue!

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