Prepare for CRAN release 7.5.1

.Rbuildignore

@@ -10,3 +10,4 @@
 ^docs$
 ^pkgdown$
 ^\.github$
+^CRAN-SUBMISSION$

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: msigdbr
 Title: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
-Version: 7.4.1.9000
+Version: 7.5.1
 Authors@R: 
  person("Igor", "Dolgalev", , "[email protected]", role = c("aut", "cre"),
  comment = c(ORCID = "0000-0003-4451-126X"))

NEWS.md

@@ -1,3 +1,7 @@
+# msigdbr 7.5.1
+
+* Based on MSigDB v7.5.1 release.
+
 # msigdbr 7.4.1
 
 * Based on MSigDB v7.4 release.

cran-comments.md

@@ -1,6 +1,6 @@
 ## Test environments
-* local R installation, R 4.0.3
-* ubuntu 20.04 (on GitHub Actions), R 3.3, R 3.6, R-release, R-devel
+* local R installation, R 4.1.2
+* ubuntu-latest (on GitHub Actions), R 3.4, R 3.6, R-release, R-devel
 * macOS (on GitHub Actions), R-release
 * win-builder (devel)
 
@@ -10,8 +10,7 @@
 
 ## revdepcheck results
 
-We checked 14 reverse dependencies (5 from CRAN + 9 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 24 reverse dependencies (10 from CRAN + 14 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
- * We failed to check 0 packages
-
+ * We failed to check 1 packages

revdep/README.md

@@ -1,43 +1,41 @@
 # Platform
 
-|field |value |
-|:--------|:----------------------------|
-|version |R version 4.0.3 (2020-10-10) |
-|os |macOS Mojave 10.14.6 |
-|system |x86_64, darwin17.0 |
-|ui |RStudio |
-|language |(EN) |
-|collate |en_US.UTF-8 |
-|ctype |en_US.UTF-8 |
-|tz |America/New_York |
-|date |2021-05-04 |
+|field |value |
+|:--------|:------------------------------------|
+|version |R version 4.1.2 (2021-11-01) |
+|os |macOS Monterey 12.2.1 |
+|system |x86_64, darwin17.0 |
+|ui |RStudio |
+|language |(EN) |
+|collate |en_US.UTF-8 |
+|ctype |en_US.UTF-8 |
+|tz |America/New_York |
+|date |2022-03-29 |
+|rstudio |2021.09.2+382 Ghost Orchid (desktop) |
+|pandoc |NA |
 
 # Dependencies
 
-|package |old |new |Δ |
-|:----------|:-----|:------|:--|
-|msigdbr |7.2.1 |7.4.1 |* |
-|cli |NA |2.5.0 |* |
-|ellipsis |NA |0.3.2 |* |
-|fansi |NA |0.4.2 |* |
-|pillar |NA |1.6.0 |* |
-|rlang |NA |0.4.11 |* |
-|tibble |NA |3.1.1 |* |
-|tidyselect |NA |1.1.1 |* |
-|utf8 |NA |1.2.1 |* |
-|vctrs |NA |0.3.8 |* |
+|package |old |new |Δ |
+|:----------|:-----|:-----|:--|
+|msigdbr |7.4.1 |7.5.1 |* |
+|cli |NA |3.2.0 |* |
+|crayon |NA |1.5.1 |* |
+|fansi |NA |1.0.3 |* |
+|glue |NA |1.6.2 |* |
+|rlang |NA |1.0.2 |* |
+|tidyselect |NA |1.1.2 |* |
 
 # Revdeps
 
-## Failed to check (1)
+## Failed to check (6)
 
 |package |version |error |warning |note |
 |:------------------|:-------|:-----|:-------|:----|
+|ChromSCape |1.4.0 |1 | |5 |
+|OSCA.advanced |? | | | |
+|pathfindR |1.6.3 |1 | | |
 |simplifyEnrichment |? | | | |
-
-## New problems (1)
-
-|package |version |error |warning |note |
-|:----------------------------------------|:-------|:------|:-------|:----|
-|[singleCellTK](problems.md#singlecelltk) |2.0.0 |__+2__ |1 |1 |
+|singleCellTK |2.4.0 |1 | |2 |
+|sparrow |? | | | |
 

revdep/cran.md

@@ -1,7 +1,12 @@
 ## revdepcheck results
 
-We checked 14 reverse dependencies (5 from CRAN + 9 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 24 reverse dependencies (10 from CRAN + 14 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
- * We failed to check 0 packages
+ * We failed to check 1 packages
 
+Issues with CRAN packages are summarised below.
+
+### Failed to check
+
+* pathfindR (NA)