release v0.5.0 (#250)

* add github action to add binder badge to PRs (#229) * use the binder badge action directly (instead of a manual implementation of it) (#233) See the discussion in #230 for more details on this switch. * preliminary AWS access (#213) * update links for travis badge (#234) * Fix failing test_visualization_date_range check for ATL07 (#241) * By default, no email status updates to users when ordering granules (#240) * remove extra cell causing errors in example notebook * Set default page size for orders to 2000 per NSIDC recommendation (#239) * Add ICESat-2 data read-in functionality (#222) * update examples from 2020 Hackweek tutorials * update add and commit GitHub Action version (and UML diagrams) (#244) * merge traffic (GitHub and PyPI) and bib updates (#245) * Release 0.5.0 (#246) * release v0.5.0 CI fixes (#251) * fix Travis CI label in readme * update earthdata login fixture for testing * add required input to pytest fixture (#252) Co-authored-by: Wei Ji <[email protected]> Co-authored-by: trey-stafford <[email protected]>
icesat2py · Dec 8, 2021 · 11569c2 · 11569c2
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diff --git a/.github/workflows/binder-badge.yml b/.github/workflows/binder-badge.yml
@@ -0,0 +1,11 @@
+name: AddBinderBadge
+on:
+  pull_request_target:
+
+jobs:
+  badge:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: manics/action-binderbadge@main
+        with:
+          githubToken: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.github/workflows/traffic_action.yml b/.github/workflows/traffic_action.yml
@@ -35,7 +35,7 @@ jobs:
     
     # Commits files to repository
     - name: Commit changes
-      uses: EndBug/add-and-commit@v4
+      uses: EndBug/add-and-commit@v7
       with:
         author_name: Jessica Scheick
         message: "GitHub traffic auto-update"

diff --git a/.github/workflows/uml_action.yml b/.github/workflows/uml_action.yml
@@ -1,6 +1,5 @@
 name: Update UML diagrams
 on:
-  workflow_dispatch:
   pull_request_review:
     types: [submitted]
 
@@ -24,7 +23,7 @@ jobs:
           rm ./packages_dev_uml.svg
           mv ./*.svg ./doc/source/user_guide/documentation/
       - name: Commit changes
-        uses: EndBug/add-and-commit@v4
+        uses: EndBug/add-and-commit@v7
         with:
           author_name: GitHub Action
           message: "GitHub action UML generation auto-update"

diff --git a/.travis.yml b/.travis.yml
@@ -12,7 +12,7 @@ before_install:
   - conda info -a
 
 install:
-  - conda create --name icepyx-env --channel conda-forge python=$TRAVIS_PYTHON_VERSION proj=7.2.0 geos
+  - conda create --name icepyx-env --channel conda-forge python=3.7 proj geos
   - source activate icepyx-env
 
   - pip install -r requirements.txt -r requirements-dev.txt
@@ -28,7 +28,7 @@ stages:
 jobs:
   include:
     - stage: basic tests
-      script: pytest icepyx/ --ignore icepyx/tests/test_behind_NSIDC_API_login.py
+      script: pytest icepyx/ --verbose --ignore icepyx/tests/test_behind_NSIDC_API_login.py
       after_success: codecov
 
     - stage: behind Earthdata

diff --git a/CONTRIBUTORS.rst b/CONTRIBUTORS.rst
@@ -21,6 +21,7 @@ order by last name) and are considered "The icepyx Developers":
 * `Jessica Scheick <https://github.com/jessicas11>`_ - Unaffiliated (ORCID: `0000-0002-3421-4459 <https://www.orcid.org/0000-0002-3421-4459>`_)
 * `David Shean <https://github.com/dshean>`_ - University of Washington
 * `Ben Smith <https://github.com/smithb>`_ - University of Washington
+* `Trey Stafford <https://github.com/trey-stafford>`_ - NSIDC, University of Colorado
 * `Amy Steiker <https://github.com/asteiker>`_ - NSIDC, University of Colorado
 * `Tyler Sutterley <https://github.com/tsutterley>`_ - University of Washington
 * `Anna Valentine <https://github.com/annavalentine>`_ - Colorado School of Mines

diff --git a/README.rst b/README.rst
@@ -3,16 +3,16 @@ icepyx
 
 **Python tools for obtaining and working with ICESat-2 data**
 
-|Documentation Status|  |GitHub license|  |Travis CI Status| |Code Coverage| |Conda install| |Pypi install|
+|Documentation Status|  |GitHub license|  |Travis Dev Branch Build Status| |Code Coverage| |Conda install| |Pypi install|
 
 .. |Documentation Status| image:: https://readthedocs.org/projects/icepyx/badge/?version=latest
    :target: http://icepyx.readthedocs.io/?badge=latest
 
 .. |GitHub license| image:: https://img.shields.io/badge/License-BSD%203--Clause-blue.svg
    :target: https://opensource.org/licenses/BSD-3-Clause
 
-.. |Travis CI Status| image:: https://travis-ci.org/icesat2py/icepyx.svg?branch=development
-    :target: https://travis-ci.org/icesat2py/icepyx
+.. |Travis Dev Branch Build Status| image:: https://app.travis-ci.com/icesat2py/icepyx.svg?branch=development
+    :target: https://app.travis-ci.com/icesat2py/icepyx
 
 .. |Code Coverage| image:: https://codecov.io/gh/icesat2py/icepyx/branch/development/graph/badge.svg
     :target: https://codecov.io/gh/icesat2py/icepyx
@@ -63,9 +63,15 @@ Listed below are example jupyter-notebooks
 
 `ICESat-2_DAAC_DataAccess2_Subsetting <https://github.com/icesat2py/icepyx/blob/main/examples/ICESat-2_DAAC_DataAccess2_Subsetting.ipynb>`_
 
-`ICESat-2_DEM_comparison_Colombia_working <https://github.com/icesat2py/icepyx/blob/main/examples/ICESat-2_DEM_comparison_Colombia_working.ipynb>`_
+`Working_with_ICESat-2_Data_Variables <https://github.com/icesat2py/icepyx/blob/main/examples/Working_with_ICESat-2_Data_Variables.ipynb>`_
+
+`ICESat-2_Data_Visualization_Example <https://github.com/icesat2py/icepyx/blob/main/examples/ICESat-2_Data_Visualization_Example.ipynb>`_
+
+`ICESat-2_Data_Read-in_Example <https://github.com/icesat2py/icepyx/blob/main/examples/ICESat-2_Data_Read-in_Example.ipynb>`_
 
-`ICESat-2 Data Visualization Example <https://github.com/icesat2py/icepyx/blob/main/examples/ICESat-2_Data_Visualization_Example.ipynb>`_
+`ICESat-2_cloud_data_access_example (BETA ONLY) <https://github.com/icesat2py/icepyx/blob/main/examples/ICESat-2_cloud_data_access_example.ipynb>`_
+
+`ICESat-2_DEM_comparison_Colombia_working <https://github.com/icesat2py/icepyx/blob/main/examples/ICESat-2_DEM_comparison_Colombia_working.ipynb>`_
 
 Citing icepyx
 -------------

diff --git a/doc/source/tracking/icepyx_pubs.bib b/doc/source/tracking/icepyx_pubs.bib
@@ -1,3 +1,4 @@
+% #########  materials about icepyx ################
 @misc{2020_IS2-HW-tutorials,
   author       = {Arendt, Anthony and
   		 Scheick, Jessica and
@@ -40,6 +41,36 @@ @misc{js2019agu
 doi = {10.1002/essoar.10501423.1},
 }
 
+
+% #########  Articles citing icepyx ################
+
+@article{https://doi.org/10.1029/2021GL095051,
+author = {Bisson, K. M. and Cael, B. B.},
+title = {How Are Under Ice Phytoplankton Related to Sea Ice in the Southern Ocean?},
+journal = {Geophysical Research Letters},
+volume = {48},
+number = {21},
+pages = {e2021GL095051},
+keywords = {phytoplankton, sea ice, southern ocean, productivity, ICESat-2, Argo},
+doi = {10.1029/2021GL095051},
+year = {2021}
+}
+
+@inProceedings{FernandoMappingDiversityAgricultural2021,
+  title = {Mapping the {{Diversity}} of {{Agricultural Systems}} in the {{Cuellaje Sector}}, {{Cotacachi}}, {{Ecuador Using ATL08}} for the {{ICESat-2 Mission}} and {{Machine Learning Techniques}}},
+  booktitle = {Computational {{Science}} and {{Its Applications}} \textendash{} {{ICCSA}} 2021},
+  author = {Fernando, Garrido},
+  editor = {Gervasi, Osvaldo and Murgante, Beniamino and Misra, Sanjay and Garau, Chiara and Ble{\v c}i{\'c}, Ivan and Taniar, David and Apduhan, Bernady O. and Rocha, Ana Maria A. C. and Tarantino, Eufemia and Torre, Carmelo Maria},
+  year = {2021},
+  volume = {12957},
+  pages = {170--181},
+  publisher = {{Springer International Publishing}},
+  address = {{Cham}},
+  doi = {10.1007/978-3-030-87013-3_13},
+  isbn = {978-3-030-87012-6 978-3-030-87013-3},
+  langid = {english}
+}
+
 @Article{tc-14-3629-2020,
 AUTHOR = {Li, T. and Dawson, G. J. and Chuter, S. J. and Bamber, J. L.},
 TITLE = {Mapping the grounding zone of Larsen~C Ice Shelf, Antarctica, from ICESat-2 laser altimetry},