Supportive code for manuscript titled "Xenosiderophore transporter gene expression and clade-specific filamentation in Candida auris killifish infection" by Hugh Gifford, Tina Bedekovic, Nicolas Helmstetter, Jack Gregory, Qinxi Ma, Alexandra C. Brand, Duncan Wilson, Johanna Rhodes, Mark Ramsdale, Tetsuhiro Kudoh, Rhys Farrer.
Please follow the bash instructions to decompress gzipped files in the data folder before using each script in sequence within a single RStudio environment.