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NOTES.md

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|Ontology|Version|
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| :---: | :---: |
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|UBERON|2024-05-13|
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|CL|2024-05-15|
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|PCL|2024-01-04|
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|UBERON|2024-05-13|
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### ASCT+b Tables
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docs/Anatomical_Systems/README.md

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Table of contents
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If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.
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1. The term _[UBERON:0011143](http://purl.obolibrary.org/obo/UBERON_0011143)_ has a different name/label in the source ontology in the following 2 rows _[40](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=40:40)_, _[40](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=40:40)_. The name/label in the **ASCT+B table** is _kidney_ and the one in the **ontology** is _upper urinary tract_. For reference, the given name/label **by SMEs** is _kidney_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
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docs/Anatomical_Systems/class_Anatomical_Systems_indirect_log.tsv

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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 38
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 39
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UBERON:0000992 ovary ovary UBERON:0000474 female reproductive system female reproductive system 44
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UBERON:0001224 renal pelvis renal pelvis UBERON:0011143 kidney kidney 40
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UBERON:0001224 renal pelvis renal pelvis UBERON:0011143 upper urinary tract kidney 40
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UBERON:0001557 upper respiratory tract upper respiratory tract UBERON:0000065 respiratory tract respiratory tract 36
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UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 37
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UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 39

docs/Anatomical_Systems/graph.md

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# ASCT+B as Graph
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{
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"no_valid_id": [],
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"no_found_id": [],
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"diff_label": [],
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"diff_label": [
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{
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"id": "UBERON:0011143",
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"label": "upper urinary tract",
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"asct_label": "kidney",
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"user_label": "kidney",
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"row_number": 40
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},
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{
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"id": "UBERON:0011143",
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"label": "upper urinary tract",
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"asct_label": "kidney",
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"user_label": "kidney",
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"row_number": 40
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}
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],
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"no_parent": []
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}

docs/Blood/README.md

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docs/Blood/assets/ccf_Blood_graph.pdf

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docs/Blood/graph.md

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# ASCT+B as Graph

docs/Blood_vasculature/README.md

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Table of contents

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