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Update_htool

Update_htool #73

Workflow file for this run

# This is a basic workflow to help you get started with Actions
name: CI
# Controls when the action will run.
on:
# Triggers the workflow on push or pull request events but only for the master branch
push:
branches: [main]
pull_request:
branches: [main]
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
# # Run tests every month
# schedule:
# - cron: '0 0 1 * *'
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
# This workflow contains a single job called "build"
linux:
# The type of runner that the job will run on
runs-on: ubuntu-latest
strategy:
matrix:
include:
- name: "Ubuntu OpenMPI g++"
CC_COMPILER: gcc
CXX_COMPILER: g++
container: "ubuntu_gcc_openmpi"
MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
USE_SANITIZER: ""
CMAKE_BUILD_TYPE: Release
DOCKER_OPTIONS: "--cap-add SYS_PTRACE"
CODE_COVERAGE: "OFF"
- name: "Ubuntu OpenMPI clang++"
CC_COMPILER: clang
CXX_COMPILER: clang++
container: "ubuntu_clang_openmpi"
MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
USE_SANITIZER: ""
CMAKE_BUILD_TYPE: Release
DOCKER_OPTIONS: "--cap-add SYS_PTRACE"
CODE_COVERAGE: "OFF"
- name: "Ubuntu MPICH g++"
CC_COMPILER: gcc
CXX_COMPILER: g++
container: "ubuntu_gcc_mpich"
MPIEXEC_PREFLAGS: ""
CMAKE_BUILD_TYPE: Debug
DOCKER_OPTIONS: " "
CODE_COVERAGE: "ON"
- name: "Ubuntu MPICH clang++"
CC_COMPILER: clang
CXX_COMPILER: clang++
container: "ubuntu_clang_mpich"
MPIEXEC_PREFLAGS: ""
CMAKE_BUILD_TYPE: Release
DOCKER_OPTIONS: " "
CODE_COVERAGE: "OFF"
# Hangs on github
- name: "Debian OpenMPI g++"
CC_COMPILER: gcc
CXX_COMPILER: g++
container: "debian_gcc_openmpi"
MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
USE_SANITIZER: ""
CMAKE_BUILD_TYPE: Release
DOCKER_OPTIONS: "--cap-add SYS_PTRACE"
CODE_COVERAGE: "OFF"
- name: "Debian OpenMPI clang++"
CC_COMPILER: clang
CXX_COMPILER: clang++
container: "debian_clang_openmpi"
MPIEXEC_PREFLAGS: "--allow-run-as-root --oversubscribe"
USE_SANITIZER: ""
CMAKE_BUILD_TYPE: Release
DOCKER_OPTIONS: "--cap-add SYS_PTRACE"
CODE_COVERAGE: "OFF"
- name: "Debian MPICH g++"
CC_COMPILER: gcc
CXX_COMPILER: g++
container: "debian_gcc_mpich"
MPIEXEC_PREFLAGS: ""
CMAKE_BUILD_TYPE: Release
DOCKER_OPTIONS: " "
CODE_COVERAGE: "OFF"
- name: "Debian MPICH clang++"
CC_COMPILER: clang
CXX_COMPILER: clang++
container: "debian_clang_mpich"
MPIEXEC_PREFLAGS: ""
CMAKE_BUILD_TYPE: Release
DOCKER_OPTIONS: " "
CODE_COVERAGE: "OFF"
container:
image: pierremarchand/htool_testing_environments:${{ matrix.container }}
options: --user root ${{ matrix.DOCKER_OPTIONS }}
name: CI (${{ matrix.name }})
env:
CC: ${{ matrix.CC_COMPILER }}
CXX: ${{ matrix.CXX_COMPILER }}
# Steps represent a sequence of tasks that will be executed as part of the job
if: "!contains(github.event.head_commit.message, '[ci skip]')"
steps:
- name: Checkout htool-python
uses: actions/checkout@v3
with:
submodules: "true"
- name: Build package in release
if: matrix.CODE_COVERAGE == 'OFF'
run: |
pip3 install cmake numpy matplotlib
pip3 install .[test] --user --verbose --no-build-isolation
- name: Build package in debug for coverage
if: matrix.CODE_COVERAGE == 'ON'
run: |
mkdir build && cd build
pip3 install cmake numpy matplotlib
CC=${{ matrix.CC_COMPILER }} CXX=${{ matrix.CXX_COMPILER }} cmake -DUSE_SANITIZER=${{ matrix.USE_SANITIZER }} -DCMAKE_BUILD_TYPE=${{ matrix.CMAKE_BUILD_TYPE }} -DCODE_COVERAGE=${{ matrix.CODE_COVERAGE }} ../
make
- name: Run tests
run: |
export PYTHONPATH="$PWD/build"
mpirun -np 1 ${{ matrix.MPIEXEC_PREFLAGS }} python3 -m pytest tests
mpirun -np 2 ${{ matrix.MPIEXEC_PREFLAGS }} python3 -m pytest tests
mpirun -np 3 ${{ matrix.MPIEXEC_PREFLAGS }} python3 -m pytest tests
mpirun -np 4 ${{ matrix.MPIEXEC_PREFLAGS }} python3 -m pytest tests
- name: Check format
if: matrix.CODE_COVERAGE == 'ON'
# https://github.com/actions/checkout/pull/762
run: |
git config --global --add safe.directory `pwd`
cd build
make format
make cmake-format
git diff --exit-code
- name: Check module imports with isort
if: matrix.CODE_COVERAGE == 'ON'
run: |
python3 -m pip install isort
python3 -m isort example --check-only --diff
python3 -m isort tests --check-only --diff
- name: Check formatting with black
if: matrix.CODE_COVERAGE == 'ON'
uses: psf/black@stable
with:
src: "./example ./tests"
- name: Generate coverage reports
if: matrix.CODE_COVERAGE == 'ON'
run: |
lcov --capture --base-directory ./ --directory build/ --output-file coverage.info
lcov --remove coverage.info '/usr/*' '*/hpddm/*' '*/pybind11/*' '*/lib/htool/*' --output-file coverage.info
- name: Upload coverage to Codecov
if: matrix.CODE_COVERAGE == 'ON'
uses: codecov/codecov-action@v2
with:
file: coverage.info