Add numpy 2.0 compatability #107

	name: Build and Test

	# Workflow is triggered only on push to the master branch or a pull request to
	# the master branch

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:
	build-and-test:
	runs-on: ubuntu-latest
	container:
	image: hoffmanlab/genomedata-test:latest

	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: 0
	# Fix ownership of the checkout dir
	- name: Set ownership
	run: \|
	chown -R $(id -u):$(id -g) $PWD
	- name: Install test dependencies
	run: \|
	python3 -m pip install flake8 mypy types-six types-setuptools
	- name: Lint with flake8
	run: \|
	flake8 . --exclude 'doc/conf.py examples/*' --count --statistics
	- name: Type check with mypy
	run: \|
	mypy genomedata test
	- name: Build repository
	run: \|
	python3 -m build
	- name: Install
	run: \|
	python3 -m pip install -v .
	pip list
	- name: Run tests
	run: \|
	cd test && python3 run_tests.py
	- uses: actions/upload-artifact@v3
	with:
	name: genomedata-source
	path: dist/genomedata*.tar.gz

	build-wheel:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: 0
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.9'
	- name: Install cibuildwheel
	run: \|
	python -m pip install --upgrade cibuildwheel
	- name: Build wheel(s)
	run: \|
	python -m cibuildwheel --output-dir wheelhouse
	- uses: actions/upload-artifact@v3
	with:
	name: genomedata-build
	path: wheelhouse/*

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