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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 785 159

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 173 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 303 48

Repositories

Showing 10 of 374 repositories
  • udi-dataset-review Public Forked from hms-dbmi/udi-grammar

    For reviewing the generated datasets.

    hms-dbmi/udi-dataset-review’s past year of commit activity
    TypeScript 0 MIT 1 0 1 Updated Apr 4, 2025
  • pic-sure-gic-common-frontend Public
    hms-dbmi/pic-sure-gic-common-frontend’s past year of commit activity
    JavaScript 0 Apache-2.0 3 0 10 Updated Apr 4, 2025
  • picsure-dictionary-etl Public
    hms-dbmi/picsure-dictionary-etl’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Apr 4, 2025
  • pic-sure-metadata-curation Public

    Parse and generate variable-level data to be exposed through the search interface.

    hms-dbmi/pic-sure-metadata-curation’s past year of commit activity
    SAS 2 Apache-2.0 2 0 0 Updated Apr 4, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 4 1 1 Updated Apr 4, 2025
  • vizarr Public

    A minimal Zarr image viewer based on Viv.

    hms-dbmi/vizarr’s past year of commit activity
    TypeScript 144 MIT 22 20 (1 issue needs help) 10 Updated Apr 4, 2025
  • viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    hms-dbmi/viv’s past year of commit activity
    JavaScript 303 MIT 48 50 (1 issue needs help) 10 Updated Apr 4, 2025
  • dbmi-fileservice Public
    hms-dbmi/dbmi-fileservice’s past year of commit activity
    Python 2 0 0 4 Updated Apr 4, 2025
  • fhirquestionnaire Public
    hms-dbmi/fhirquestionnaire’s past year of commit activity
    HTML 2 0 0 4 Updated Apr 4, 2025
  • hypatio-app Public
    hms-dbmi/hypatio-app’s past year of commit activity
    Python 4 0 0 8 Updated Apr 4, 2025
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